Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3213 ATGTCAGTGCTGATCGTGACAAGCTTAGGGGACATTGTCGTTGATTTACATACCGACAAGTGCCCCCTCACCTGCAAGAACTTCCTCAAGCTCTGCAAGATTAAGTACTATAATGGCTGTCTATTTCACACTGTTCAGAAGGATTTCACTGCTCAGACTGGTGATCCCACAGGAACAGGCACTGGTGGCGATTCCATCTACAAGTTTCTTTATGGTGATCAAGCTCGATTTTTTGGCGATGAAATTCGGGTTGATCTGAAGCATTCCAAGACTGGAACAGTTGCCATGGCAAGTGCAGGAGAGAATCTGAATGCTTCACAGTTTTATATCACTCTGCGTGATGACCTCGATTACCTTGATGGGAAACACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGGCTTTGACCAGAATAAATGAGGCTTATGTGGATGAAAAGAGCAGACCATATAAAAATATACGAATCAAGCACACATACATCCTAGAGGATCCTTATGATGATCCTCCTCAGCTAGCTGAGTTCATTCCTGAAGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAGGTGCGACTTGAAGATGATTGGGTTCCCATGGATGAACAATTAAATCCAGCAGAGCTTGAGGAGGTTATTAGAGAGAAGGAAGCACGTTCTAGGGCAGTCGTACTTGAGAGTATTGGCGATATTCCTGATGCTGAGATTAAACCTCCGGATAATGTGCTATTTGTTTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACGATATTTTCACGATTTGGAACTGTATCATCGGCTGAAATCATCCGGGACCACAAGACTGGTGACAGTTTATGCTATGCTTTCATTGAGTTTGAGGACAAAATGTCATGTGAACAGGCATATTTTAAGATGGATAATGCTTTGATCGATGATCGAAGAATACATGTGGATTTTAGTCAAAGTGTGGCAAAATTGTGGTCGCAATATAGGCGGAATCAGAAGGGCAAAGGTGGAGGTTGCTTCAAATGTGGTTCTGCAGATCATATTGCTAAGGATTGCACTGCTGATGATTCAATGAAACAACCTGCAAAATTCGTCTTGAAGGATAACAATACCCAACATGGTGGAGATAACACCAGATATGAGATGGTTTTTGATGGAGATAACACACAAAATCCAAAGAGAGATGATAGGAAAAGCCAACGGCGTGAGAGGGATGACATAGTTGAGAACAGTATGAAGGACAATTTTAAAGATCATATTCGTAGAGGGCGTAAGGATGAGATGGTAGGCTCCAACAACAGAAATAGGTACAGTGATAGACACAGGGAACGTGGGGGAGATGGAGATGATAAAGCACGAGCTGAAAAAGAATCAAGAGATTCAGATTATCATTCAGACAGGAAAGACAGAGAAAAGCATAAGGAAATAAATAGAGACGATGACTACAGGCGGAAAGATGAGGTAGACCCAAGAAAAAGACACTTGGATGATAGATACACAGAAAGACGTGCTAGTGGAGATCACAGGAGAGAATCAGATGGTAACCGTCTGGAGAAAAGGGATGGCAGAGATTATAGGAAGAGACCTGAAGACAGCAGAAGGCATGACAGGAAGATCGATAGCAGACCAAAAAGAAGAAGTCCTGATGAAGATTACAAACATAAAAGGGAGGATGAAGATTATAAACGCAGAAGGGAGGATGAGGATTATAGACACGGAAGGGAAGAACGCGGACTTAGAAGACTAGATACTGAGCCTCGTGACTATTCCGATAGGAAGCATCATGGTGACAGGAGATGA 1803 0.4248 MSVLIVTSLGDIVVDLHTDKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSIYKFLYGDQARFFGDEIRVDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFEALTRINEAYVDEKSRPYKNIRIKHTYILEDPYDDPPQLAEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIREKEARSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKMSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRNQKGKGGGCFKCGSADHIAKDCTADDSMKQPAKFVLKDNNTQHGGDNTRYEMVFDGDNTQNPKRDDRKSQRRERDDIVENSMKDNFKDHIRRGRKDEMVGSNNRNRYSDRHRERGGDGDDKARAEKESRDSDYHSDRKDREKHKEINRDDDYRRKDEVDPRKRHLDDRYTERRASGDHRRESDGNRLEKRDGRDYRKRPEDSRRHDRKIDSRPKRRSPDEDYKHKREDEDYKRRREDEDYRHGREERGLRRLDTEPRDYSDRKHHGDRR* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3213 600 Gene3D - 235 347 IPR012677 -
Amo10g3213 600 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Amo10g3213 600 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Amo10g3213 600 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Amo10g3213 600 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Amo10g3213 600 MobiDBLite consensus disorder prediction 367 600 - -
Amo10g3213 600 Pfam Zinc knuckle 339 354 IPR001878 GO:0003676|GO:0008270
Amo10g3213 600 SMART rrm1_1 244 317 IPR000504 GO:0003723
Amo10g3213 600 SMART c2hcfinal6 339 355 IPR001878 GO:0003676|GO:0008270
Amo10g3213 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Amo10g3213 600 CDD cyclophilin_RRM 4 169 IPR035538 -
Amo10g3213 600 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Amo10g3213 600 Gene3D - 1 172 IPR029000 -
Amo10g3213 600 SUPERFAMILY RNA-binding domain, RBD 230 339 IPR035979 GO:0003676
Amo10g3213 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Amo10g3213 600 MobiDBLite consensus disorder prediction 389 600 - -
Amo10g3213 600 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Amo10g3213 600 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 488 IPR035542 -
Amo10g3213 600 CDD RRM_PPIL4 240 322 - -
Amo10g3213 600 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Amo10g3213 600 ProSiteProfiles Zinc finger CCHC-type profile. 340 353 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3213 Amo-Chr10 97860825 97868894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3213 7 166 U-box Gene Family AT5G67530 41.250 4.46e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3213 K12735 - gmx:100776900 885.56