Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3165 ATGGCTAATAATTTTTCATGCCTCCTTATTCTCTTTGCTCTTTCTCTTCTCACACCTTTTTTTGTTTCCTCCTCTAAGGTTCAAGACCCGGAACTAGTTGTACAAGAAGTACAAAGGAGCATCTATAATGCCTCTAGTAGAAGAAGCTTGGGATATCTATCATGTGGATCTGGTAACCCCATTGACGATTGTTGGAGATGTGACTCGAATTGGGAGAACAACCGGCAACGGCTAGCCGATTGCGCCATCGGGTTCGGGAAGGACGCCATGGGAGGAAGAAATGGTAGAATCTATGTGGTGAGTGACCCTGGTGATGATGACCCAGTGAACCCAAGGCCAGGAACTATAAGGCATGCTGCAATTCAAGATGAACCACTTTGGATCATTTTCCAGAGAGATATGGTCATCAATTTGAAGGAAGAGCTTTTGGTAAATTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGATGCATCACCATACATTATGTGAGCAACATCATCATACATGGGATTCACATCCATGATTGCAAGCCAACAGGGAACACAAACATTAGAGACTCACCAGAACATTCTGGGTTTTGGACGGTCTCAGATGGTGATGGAGTGTCCATATTTAACTCAAAGCATATATGGGTTGATCATTGCTCCTTGTCTAATTGCCGTGATGGTCTCATTGATGCCATTCATGGATCCACAGCTATAACCATCTCCAACAACTACATGACTCATCATGATAAGGTCATGCTTTTGGGACACAGTGATTCCTACACACAAGACAAGGACATGCAGGTCACCATTGCATTCAATCATTTTGGTGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACACGGTTATTTCCACGTGGTGAACAACGACTATACACACTGGGAAATGTATGCAATTGGAGGCAGTGCAAATCCTACAATCAACAGCCAAGGCAACCGTTTTCTTGCACCGGATAACCGTTTCAGCAAGGAAGTAACAAAGCACGAAGACGCGCCGCAGAGCGAGTGGGCCAACTGGAACTGGAGGTCAGAGGGAGACCTCTTCTTGAATGGAGCATTCTTCAGGGCATCAGGTGCCGGTGCTTCTTCCGCCAGCTACGCTCGAGCGTCCAGCCTCAGCGCAAGACCTTCTTCTCTCGTTGGTTCCATAACTACCACTGCCGGTGCGCTTAACTGTCGCAAGGGGTCACGCTGTTGA 1227 0.4678 MANNFSCLLILFALSLLTPFFVSSSKVQDPELVVQEVQRSIYNASSRRSLGYLSCGSGNPIDDCWRCDSNWENNRQRLADCAIGFGKDAMGGRNGRIYVVSDPGDDDPVNPRPGTIRHAAIQDEPLWIIFQRDMVINLKEELLVNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGIHIHDCKPTGNTNIRDSPEHSGFWTVSDGDGVSIFNSKHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAPQSEWANWNWRSEGDLFLNGAFFRASGAGASSASYARASSLSARPSSLVGSITTTAGALNCRKGSRC* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3165 408 Pfam Pectate lyase 140 324 IPR002022 -
Amo10g3165 408 SUPERFAMILY Pectin lyase-like 34 403 IPR011050 -
Amo10g3165 408 PANTHER PECTATE LYASE 18-RELATED 23 405 IPR045032 GO:0030570
Amo10g3165 408 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Amo10g3165 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Amo10g3165 408 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Amo10g3165 408 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Amo10g3165 408 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Amo10g3165 408 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Amo10g3165 408 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Amo10g3165 408 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Amo10g3165 408 SMART amb_all 133 330 IPR002022 -
Amo10g3165 408 Gene3D - 58 401 IPR012334 -
Amo10g3165 408 PANTHER OS04G0137100 PROTEIN 23 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3165 Amo-Chr10 97236154 97239660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3165 1 408 Polysaccharide Lyase AT5G63180 75.306 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3165 K01728 - gmx:100810380 734.176