Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3144 ATGGATCGAGAATGGGGTTCCAAGCCAGGGAGCGGCGGCGCCGCCTCCGCTCAGAACGAAGCCATCGACCGCCGTGAGCGTCTCCGGCGGCTTGCCCTCGAGACCATTGATCTCGCCAAGGATCCTTATTTCATGCGCAATCACCTCGGAAGCTACGAATGCAAGCTTTGCTTGACTTTGCACAACAATGAAGGGAACTACTTGGCCCATACGCAGGGGAAACGACATCAAACGAATTTGGCGAAGCGTGCTGCTCGTGAAGCTAAAGATGCTCCAGCTCAACCTCAACCTCACAAGCGCAAAGTTTCCGTTCGCAAAACAGTCAAGATTGGTCGACCTGGATATCGGGTGACAAAGCAATATGATCCAGAGACAAAGCAACGATCTCTGCTTTTCCAGATTGAATATCCTGAGATTGAAGACCTAACAAAGCCAAGGCACCGATTTATGTCTTCTTATGAGCAGAGGGTGCAACCATTTGATAAAAGATATCAATATCTTTTGTTTGCGGCTGAACCATATGAAATCATTGCTTTCAAGGTCCCTAGCACGGAGATTGATAAGTCTACACCAAAATTTTTCTCACACTGGGACCCAGATTCAAAGATGTTCACGCTACAATTGTATTTTAAATCCAAGCCACCAGAGGCAAACAAACCACAGCCCCCATCTACAGCCAATGGTACAGCAGCACCTGGTGTTCCACCAAGGCCCATGCCCCCGCCACCTCAAGCTCCACCACCACCTCCTCCTCCTCCACAGGGGCTACCTCCTGGTGCACCTATTGGAAATCCTCCTAGAGCCCCTCCACCACCAATGCCAGGATCATTGCCACCCCCTCCTCCTATGGCAAATGGTCCCAGACCTGCACCTCCTGGTGGAATGCCATCTATCCCGCCCCCTCCCCCAGTTGGCAGTGGCACATCAGGAGGTTTCAACATGGGTTCTAGACCGCCGTCAATGCCACCTCCACCTCAAGGTTTCCCATCCCAACAAATGCAGAATCAGGGTGTCCGGATGCCTCCACCTCCCCCTAACATGGGACAGTAG 1050 0.52 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEANKPQPPSTANGTAAPGVPPRPMPPPPQAPPPPPPPPQGLPPGAPIGNPPRAPPPPMPGSLPPPPPMANGPRPAPPGGMPSIPPPPPVGSGTSGGFNMGSRPPSMPPPPQGFPSQQMQNQGVRMPPPPPNMGQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3144 349 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Amo10g3144 349 Gene3D Classic Zinc Finger 46 89 - -
Amo10g3144 349 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Amo10g3144 349 Pfam Zinc-finger of C2H2 type 52 76 - -
Amo10g3144 349 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Amo10g3144 349 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Amo10g3144 349 MobiDBLite consensus disorder prediction 213 349 - -
Amo10g3144 349 PRINTS Proline rich extensin signature 211 232 - -
Amo10g3144 349 PRINTS Proline rich extensin signature 236 252 - -
Amo10g3144 349 PRINTS Proline rich extensin signature 253 270 - -
Amo10g3144 349 PRINTS Proline rich extensin signature 271 296 - -
Amo10g3144 349 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 343 - -
Amo10g3144 349 MobiDBLite consensus disorder prediction 1 21 - -
Amo10g3144 349 Gene3D - 93 218 - -
Amo10g3144 349 MobiDBLite consensus disorder prediction 233 306 - -
Amo10g3144 349 SMART CactinC_cactus_3 89 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3144 Amo-Chr10 97036415 97040140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3144 1 228 C2H2 Transcription Factor Family AT2G32600 89.912 3.99e-144 407