Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3121 ATGTACTTCTTATATTGTAGGCTTAAGGCATCATTATGCCTTAAAWTTGTGTGCAWGGATTCCTTCTTAGTTCTTATGATGTGGTATATGCTTAGTGGTACGAAACTACCTACATCTGGTGTATCTATCTGTGATTGGGACAAGAGAAGTTCRATACTTTCTGATCCAGACTATTTTATGAAGACTTTTGGGACAAGCGACAACATCTGGAACCTTTCTGACTGTCATGTACTTGGTTGCAAGCTCCATTGTGGTGCGAGTGATTCTTCAAAGAAAAGACTATTTGAACTTCATGAAATATTTAAGATGGTACCTGGTGTTGGAAAACAGCAGAAATCTAACAATTCAAGGATAGTACCTATTGATAATGCTTTCGGATCTGGGATTTGGGAGATATCTGATGATATTTTAACCAAAATTTTAGCTTGCCTTGGTCCAATGGACCTCACTAGGGTATCTGCAACATGTCGACATCTCAGATCCTTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTCTTTCCTCATCAGCAGACTGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATTTTGAACARTTGCTACATCCCTTATATATTGCTCTCTTAACTGAAGATGGCTTTAGTTTCCACGTGAATACTGTATCTGGGGAAATAATTTCTGAGGAAACTCCCACCATCAGAGATTTTCGCGGAGGGATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAACACTTTCTCTTATTGTGAAGACACAAGGTACTCTGGCAGATCCACCAGACGGGGCAGAAGTAATCTGGTGTCAACATAATGGTAACCAGAAATGTGGTTATTATGAGATCAGTGGTAATAATATAACTGGTTTTTGTGTGTTGGGTAAGAGGGATGTGGCCCAAGATACTAGTAAGAATAATGAGAACCATGACTACTCCTCAAAAAGAGCCAGATTGATGAATCCTGCTGGGAAAATTACTACACAAAATGACGTAATTTCTGCAGAAGCTATGAAATCGCCTGTAGATGCATCCTTTGAAGAATCGGTGCCTGCCAGTCGAAGCACTAGGAGTCTCAGTTGCGTCAAGAAAAAACTGAATCTCTCCTTTGAAGATGAAGACTTGATTTTCAAGGAAAGAAGAGTTGGTATGAGATCACATAAAAGAAATCAYGMATCAGATATTGCATCATGTGTACCACCAAATAAACTAGTTAATGCTTCATATGGACGTGGGAAAAGTTCCAAGTTGCGTGGGAATCCTAAAGTTGATTGTTTGGAGTCCAAKGATACATGGATTCAGTGCGATGCATGTCACAAATGGCGAAAGSTTGCAGATAATATTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTCATATCAGAGTTGTAGTGTCCCAGAACAACATTTCCAGAATAGCTGTAAGATAACATACTTGCCAGGATTTCACTTGAAAGGAACTCTTGGGGGTTTGGAACAAAATATTTCCTTTTTCATTAGTGTTCTTAAGGAGCACTGTACATTGCTGAATTCTCARTCAAAGAAGGCTCTGACTTGGTTGGTTAAACTTTCAGCAGATCRGATTGCAGGAATGGAAACACATGGCATACGGGGGCCCATTTTGAACTCYTGTAGTACRTCTAATGGATATTTTAATGCATTCCACAAAATATTTCAAGCATTTGGCCTTGTAAAGAGAGTAGAGAAAGGTATATGCAAGTGGTACTACCCACAAAATCTTAGCAATTTGACTTTTGATGTGAAAGCACTTGGCATGGCTCTRCGTGAGCCATTAGATTTTGTGAGGCTRTACTTGTCAAGAGCAACCCTCATAGTTGTTCCAGCAAATCTGGTTGATCATTGGAAAACACAAATAGAGAAGCATGTAACTCCTGGTCAATTGCGGGTGTATGTTTGCGTTGATCAGCGGAAGCCATCTGCACACTGTTTAGCTTGGGATTATGATGTTGTTATAACTACCTTTAGCCGTTTAAGTGCAGAGTGGAACCCACGTAAGAGGAGTGTTTTGATGCAAGTACATTGGTTTAGGATAATTTTAGAYGAAGGTCACACTCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCAATGATGGCTTCAAATCGTTGGATACTAACAGGTACTCCAACACCTAACACCCCTAACAGCCAACTCCCACATCTACAACCTCTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAGAAGTCGTGGGAAGCTGGCATCCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTCGCGCCTGTTGCATTTAATTCAGAAGTGCATGATTAGTGCAAGAAAGGTAGACTTGCAAAACATTCCGCCATGCATTAAGAAAGTTGTTTATGTGGATTTCAGTGAGGAACATGCTAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAATGGAAATTTCGAAGTGCAACCATAAAGAATGTGAGGCTSTCTTGCTGTGTTGCTGGGCATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGATATTTTAGCACAAAGTGGTCTTGATSCTACTTCRGCRGAGTATAGCTCCATAAGATATAGTCTCCTATTTGGTGGTAATTGTGTCAGATGCAAGGAGTGGTGCCGCCTTCCTCTCATTACACCTTGTCGCCATCTATTGTGCCTTGATTGTGTTTCTTTAGACAATATGAAGTGTACATACCCTGGATGTGGTAAASCATACGAAATGGAGAGTCCTGATTCATTGGCCCGACCAGAAAATCCTAACCCAAAGTGGCCTGTGCCCAAAGATCTTATTGAGTTGCAGCCTTCGTATAAGCAGGATGATTGGGATCCTGATTGGCAATCAACTTCTAGTAGTAAAGTCTCCTATCTTGTCCAGAGGTTAAAAGCTTTGCAAGAAAKCAATGAAGAGATGGGTTTCTGCAAAGCCAAGAGCAATCATGAGCTTGATACTGAGAATAGCTYCCCTATGCATATGAGAGATGGTGGATCATTATTCCAGGAATGTTCTATAAGAAGCACTATGACCAATATGAAACCTGACAAAGTTTTGATATTTTCCCAGTTTCTGGAGCATATACATGTCATTGAACAGCAGTTGACCATTGCTGGTATCAAATATGCTGGAATGTATAGCCCAATGCATTCAAGCAGCAAGAAGAAGTCATTAGCCACATTCCAGCATGATTCAAGTTGTATGGCACTTGTGATGGATGGAAGCGCTGCATTGGGGCTTGACCTGAGTTTCGTTACGCATGTATTTTTGATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGCCGTGCCCATCGCATGGGTGCTTCTCGTCCTATTCATGTGGAAACCTTGGCAATGCGTGGTACCATTGAAGAACAAATGGTGGAGTATTTACAGGATGCTGATAAATGTAGAAGATTTCCTAGTCAAGATRCTCCCAAATCTGTAGATGATAGYGGGGSACGAGGACACCGTTCATTACATGATTTTGCTGAAAGTAGTTATCTACTCAAACTTAGATTTGTATATACTAATCCAGAAACCCTAAAAGGTGTATGA 3690 0.4046 MYFLYCRLKASLCLKXVCXDSFLVLMMWYMLSGTKLPTSGVSICDWDKRSSILSDPDYFMKTFGTSDNIWNLSDCHVLGCKLHCGASDSSKKRLFELHEIFKMVPGVGKQQKSNNSRIVPIDNAFGSGIWEISDDILTKILACLGPMDLTRVSATCRHLRSLAASVMPCTKLNLFPHQQTAVEWMLHRERNFEQLLHPLYIALLTEDGFSFHVNTVSGEIISEETPTIRDFRGGMFCDEPGLGKTVTTLSLIVKTQGTLADPPDGAEVIWCQHNGNQKCGYYEISGNNITGFCVLGKRDVAQDTSKNNENHDYSSKRARLMNPAGKITTQNDVISAEAMKSPVDASFEESVPASRSTRSLSCVKKKLNLSFEDEDLIFKERRVGMRSHKRNHXSDIASCVPPNKLVNASYGRGKSSKLRGNPKVDCLESXDTWIQCDACHKWRKXADNIMANSSAAWFCSMNTDPSYQSCSVPEQHFQNSCKITYLPGFHLKGTLGGLEQNISFFISVLKEHCTLLNSQSKKALTWLVKLSADXIAGMETHGIRGPILNSCSTSNGYFNAFHKIFQAFGLVKRVEKGICKWYYPQNLSNLTFDVKALGMALREPLDFVRLYLSRATLIVVPANLVDHWKTQIEKHVTPGQLRVYVCVDQRKPSAHCLAWDYDVVITTFSRLSAEWNPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISMMASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLNQKSWEAGILRPFEAEMEEGRSRLLHLIQKCMISARKVDLQNIPPCIKKVVYVDFSEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDILAQSGLDXTSAEYSSIRYSLLFGGNCVRCKEWCRLPLITPCRHLLCLDCVSLDNMKCTYPGCGKXYEMESPDSLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVSYLVQRLKALQEXNEEMGFCKAKSNHELDTENSXPMHMRDGGSLFQECSIRSTMTNMKPDKVLIFSQFLEHIHVIEQQLTIAGIKYAGMYSPMHSSSKKKSLATFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMVEYLQDADKCRRFPSQDXPKSVDDSGXRGHRSLHDFAESSYLLKLRFVYTNPETLKGV* 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3121 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 255 IPR027417 -
Amo10g3121 1229 SMART fbox_2 132 172 IPR001810 GO:0005515
Amo10g3121 1229 Pfam F-box domain 132 166 IPR001810 GO:0005515
Amo10g3121 1229 ProSitePatterns Zinc finger RING-type signature. 923 932 IPR017907 -
Amo10g3121 1229 ProSiteProfiles Zinc finger CW-type profile. 427 478 IPR011124 GO:0008270
Amo10g3121 1229 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 44 1210 - -
Amo10g3121 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 1202 IPR027417 -
Amo10g3121 1229 PANTHER OS01G0952200 PROTEIN 44 1210 - -
Amo10g3121 1229 Gene3D - 599 789 IPR038718 -
Amo10g3121 1229 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 616 745 IPR014001 -
Amo10g3121 1229 CDD SF2_C_SNF 1054 1161 - -
Amo10g3121 1229 Gene3D - 427 481 - -
Amo10g3121 1229 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1045 1197 IPR001650 -
Amo10g3121 1229 Pfam CW-type Zinc Finger 432 475 IPR011124 GO:0008270
Amo10g3121 1229 SMART ultradead3 170 756 IPR014001 -
Amo10g3121 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 785 IPR027417 -
Amo10g3121 1229 Gene3D - 953 1184 IPR027417 -
Amo10g3121 1229 CDD DEXDc_SHPRH-like 609 786 - -
Amo10g3121 1229 Pfam Helicase conserved C-terminal domain 1052 1151 IPR001650 -
Amo10g3121 1229 SMART helicmild6 1069 1151 IPR001650 -
Amo10g3121 1229 Pfam SNF2-related domain 177 843 IPR000330 GO:0005524|GO:0140658
Amo10g3121 1229 SUPERFAMILY F-box domain 128 165 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3121 Amo-Chr10 96837702 96843720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3121 615 1171 RAD5 or RAD16-like Gene Family AT5G22750 25.589 2.22e-42 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo10g3121 SNF2_N 2.2e-97 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3121 - - adu:107471940 2417.5