Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3116 ATGAGTATGCTAGGCCTCACAGACTTGGTTTTCATAGCTCCAAATCCTTCTTCTCTTCACCACCATCGCCAACAACAACTGATTTCAACGGAAAACGACAACAACAACAGCAACAACAATCCTCTGAGCGTTGGTTTCGGCATTTTTCCACTCTTAGCAGCCACGCCCTGCGTTCAGGTAGTTCAGAATCAGAGCAATGAGGAGGCGATGGAAGATTCTGGAAAGAAGAAGAAGAAGATCGAAGAAGATGAAAATGGCGGTGAATTTAGGGTTTGTACGGACTGTGGAAACAGAGCGAAGAAAGATTGCGTGTACAGACGGTGCAGGAGTTGTTGCAAGGGGCGTGGATATGACTGTACCACTCACGTGAGGAGCACGTGGGTGCCTGCTCTAAAACGCCGCGAGCGCCACGTGGCGGTGACTGGTGTTGGTGGAGAAGCTGCTAATAAGAGGACAAAGAACAATAATGGATGTGCAAGTGGAAGTGCTACCTCTCATTCTCATACTTCCACCAACTCTGATTCCTGCTATTCTCATCAAGATGCTAGGTTCAAAGAATCATTGCCAGGTCATGTTCGTGCACCTGCTGTGTTCAGATGCCATAGAGTCTCAACTGTTGGAAATGGTGAAAATGAATTTGCATATTTAGCAACGGTTCATATAAGTGGCCATGTATTCAGGGGATTTCTCTATGACCATGGTGTTGATCCCAAAAATACAATAATGCCCTCCTATGCTTCAGAACTTCAACTAGGAAACAACTGCATAAGTAATGGGAAGAACAAGGAATGTTCTTCTTCTGCAATTGGGGTTACAACCAATGAATATGATAATCTCTATTCTGCTTCTGCTGCTAGCTAG 861 0.4506 MSMLGLTDLVFIAPNPSSLHHHRQQQLISTENDNNNSNNNPLSVGFGIFPLLAATPCVQVVQNQSNEEAMEDSGKKKKKIEEDENGGEFRVCTDCGNRAKKDCVYRRCRSCCKGRGYDCTTHVRSTWVPALKRRERHVAVTGVGGEAANKRTKNNNGCASGSATSHSHTSTNSDSCYSHQDARFKESLPGHVRAPAVFRCHRVSTVGNGENEFAYLATVHISGHVFRGFLYDHGVDPKNTIMPSYASELQLGNNCISNGKNKECSSSAIGVTTNEYDNLYSASAAS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3116 286 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 188 235 IPR006511 -
Amo10g3116 286 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 60 - -
Amo10g3116 286 Pfam Domain of unknown function (DUF702) 91 236 - -
Amo10g3116 286 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 67 277 - -
Amo10g3116 286 MobiDBLite consensus disorder prediction 145 172 - -
Amo10g3116 286 MobiDBLite consensus disorder prediction 148 172 - -
Amo10g3116 286 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 67 277 IPR007818 GO:0003700|GO:0006355
Amo10g3116 286 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 60 IPR007818 GO:0003700|GO:0006355
Amo10g3116 286 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 91 133 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3116 Amo-Chr10 96780620 96783904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3116 1 269 C2H2 Transcription Factor Family AT5G12330 35.390 8.80e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo10g3116 DUF702 1.7e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3116 - - ahf:112784666 558.91