Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3068 ATGAAAATCCCTTGCTGTTCGGTTTGCCAAACGCGGTACAACGAGGAGGAGCGAGTTCCGCTGCTGCTCCAATGTGGACACGGATTCTGCAAAGAGTGCCTTTCTAGAATGTTCTCTGCATCGCCCGACGCAACGCTCACATGTCCACGATGCCGCCACGTGTCAACCGTCGGGAACTCCGTACAGGCTCTGCGAAAGAATTACGCTGTTTTGGCACTCATCCACTCCGCCGCCGCCGGAGCTCGAGGTGCTGCTGGAGGCTCGAATTTCGACTGCGACTACACCGACGACGATGACGAGGATGAGGACGGTGGCGGAAGCGGGGACGATGAGGACGATTATGACGGTGATGACGAGGAGAAGCGGCGGCGGCGGTGCAGCAGAGCGTCGCAGACGTCGAGCTCCGGCGGGTGCGAGCCGGTGATCGAGGTCGGAGCGCACCCGGACTTGAAGCTGGTGCGGCGGATTGGGGAGGGGAGGAGAGCTGGTGTTGAGATGTGGACGGCGGTGATCGGAGGAAGCGGAGGACGGTGCCGGCACCAGGTGGCGGTTAAGAAGGTGGCGGTGATGGAGGGGATGGATTTGGAGTGGATTCAGGGGAATCTCGAGAATTTGCGGAGAGCTTCGATGTGGTGCAGGAACGTGTGCACTTTCCATGGAGCAATGAAGCATGAAGAGAGCTTGTGCCTTGTGATGGATAGGTGCTATGGATCGGTTCAGTCTGAGATGCAGAGAAATGAGGGCAGGCTCACTTTGGAACAAGTCCTAAGATATGGAGCAGACATTGCAAGAGGGGTTGTTGAGCTTCATGCTGCTGGTGTCGTTTGCATGAATTTAAAACCTTCCAATCTTCTTCTTGATTCAAATGGGCACGCGGTAGTTTCTGATTATGGACTTGCTACAATTTTAAAGAAGCCTTCCTGTTGGAAGGCGCGGCCGGAGTGTGACTCCTCAAAGATCCACTCTTGTATGGAATGTATAATGCTCAGTCCACATTATACAGCACCCGAGGCTTGGGAACCTGGGAAGAAGTCACTAAATATTTTCTGGGATGATGCAATAGGTATATCTCCCGAGTCAGATGCATGGAGTTTTGGTTGTACATTGGTTGAGATGTGCACGGGTGCCATTCCTTGGGCTGGCTTAAGTGCAGAAGAAATTTATCGTTCAGTTGTTAAAGCCAAGAGACTTCCTCCACAGTATGCCAGTGTGGTTGGTGGTGGAATTCCAAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACATTTAATGCAATGTTAGCAATATTTCTCCGCCATTTGCAGGAAATACCGCGCAGCCCTCCTGCAAGCCCTGATAATGACTTTGTCAAACGCTCTGTGTCTAATGTTACTGAACCAACCCCAGCCCCTGAATTAGATGTCCCTCAAGAAATGCCAAACCCAAACCATCTTCACCGCTTTGTGTCTGAAGGGGATGCCACAGGAGTTAGAGATCTTCTTGCGAAGGCTGCATCAGAAAATGGCAGCGATTACATATCTTCTCTACTGGAATCTCAAAATGTTGATGGGCAAACAGCTCTTCACTTAGCTTGTAGGCGTGGAAGTGCAGAGCTTGTCGAGGCCATTTTGGAGTATAAAGAGGCTAATGTTGATGTCTTGGACAAAGATGGAGATCCTCCTCTTGTTTTTGCTTTAGCAGCTGGCTCTCCAGATTGTGTTCGTTGCCTCATCAAAAGAAATGCTAATGTGACATCAAGACTGAGGGATGGCTTGGGCCCATCTGTCGCTCATGTTTGTGCTTATCATGGACAACCAGATTGTATGCGAGAACTACTATTAGCTGGAGCTGATCCTAATGCAGTGGATGATGAAGGAGAATCTGTATTGCATAGGGCAGTTGCTAAGAAGTATACAGACTGTGCCATTGTAATATTAGAAAATGGAGGCTGTAGATCAATGGCCATTATGAACTCAAAGAACCTGACACCGCTACACTTGTGTGTGGCAACATGGAATGTTGCTGTTGTGAAGCGATGGGTGGAAGTTGCAACTTCAGATGAGATTGCTGAAGCAATTGACATACCGAGCCCAATTGGAACTGCCTTGTGCATGGCAGCAGCTTCTAAGAAAGATCATGAAAGCGAAGGGAGAGAATTGGTGCGGATACTGCTTGCGGCAGGAGCGGATCCGTCTGCTCAAGATTCACAGAATGGGAGGACAGCTTTGCATACAGCTGCTATGACAAATGATGTGGACTTGGTCAAGGTCATTCTTGCTGCTGGAGTTGATGTGAACATTTGCAATATACACAACAGTATACCTCTTCACTTGGCATTAGCTAGGGGTGCAAAGGCATCTGTTGGACTGCTTCTAGCTGCTGGGGCAGATTACAATTTGCAGGATGATGATGGTGACAATGCTTTCCATATAGCAGCAGAGACAGCCAAAATGATACGTGAAAATCTTGACTGGCTCATTGTTATGCTAAGGAATTCCGATGCTGATATTGAAGTCAGAAACCACAGTGGCAGGACACTACGTGACATCTTGGAGGCCCTTCCCCGAGAATGGATATCTGAAGATCTGATGGAGGCACTCATGAATAGAGGAGTTCATCTTTCTCCTACAATATTTGAAGTGGGAGACTGGGTGAAATTTAAAAGAACTGTCACAGCTCCTACCTATGGGTGGCAAGGTGCTAGACCAAAGAGTGTTGGATTTGTGCAAAGTATTCAAGATCGTGATAATCTCATTGTTTCATTTTGCTCTGGAGAAGTTCATGTTTTGGCAAATGAAATTGTAAAACTCATTCCATTAGACCGAGGGCAACATGTACAGTTGAAAGAAGATGTGAAAGAGCCCAGGTTTGGTTGGCGTGGGCAGTCACGTGACAGCATTGGAACAGTGTTATGTGTTGATGATGATGGAATTCTCCGTGTTGGGTTCCCTGGAGCATCAAGGGGATGGAAAGCTGACCCTGCAGAGATGGAACGGGTTGAGGAATTCAAGGTTGGAGACTGGGTTCGGATTCGTCCTACTCTTACATCAGCTAAACATGGATTAGGATCCGTTACACCTGGAAGCATTGGCATTGTATATTGTATCAGACCAGACAGTAGTCTATTAATAGAACTCAGCTATCTTCCAAATCCATGGCATTGTGAACCAGAGGAGGTGGAGCATGTTGCTCCTTTTAGGATTGGTGATCGCGTCTGTGTGAAGCGTTCTGTTGCAGAACCTAGATATGCTTGGGGTGGTGAGACACATCATAGTGTTGGAAGGATAAGCGAGATTGAGAATGATGGTCTCCTAATAATTGAAATACCAAACCGACCCATACCATGGCAAGCTGATCCATCTGATATGGAGAAGGTGGAAGATTTCAAGGTTGGAGATTGGGTCAGAGTGAAAGCTTCAGTTCCTGCTCCAAAGTATGGATGGGAGGATACTAACAGGAACAGTATTGGGGTAATCCATAGCTTGGAGGAAGATGGTGATATGGGTGTCGCCTTTTGCTTCAGAAGCAAGCCTTTTTCTTGTTCAGTAACTGATGTGGAGAAAGTTCCTCCTTTTGAGGTGGGACAAGAAATTCACGTGATGCCATCTGTTTCTCAGCCACGACTTGGATGGTCAAATGAATCACCAGCTACTGTTGGGAAAATAGCAAGAATTGACATGGATGGTGCTCTTAATTTGAAAGTCACTGGTAGGCAAAGCTTGTGGAAAGTTTCTCCTGGAGATGCAGAACGACTTCCTGGATTTGAAGTTGGGGATTGGGTACGCTCTAAACCAAGCTTGGGGAATAGACCAAGTTATGACTGGAATACTGTCGGAAGGGAAAGTTTAGCTGTTGTGCATAGTGTACAGGATTCTGGATACTTGGAGTTGGCTTGTTGTTTCCGTAAAGGGAAGTGGATCGCTCATTACACAGATGTTGAAAAGGTTCCCAGCTTCAAAATTGGGCAATATGTTAGATTTCGAAATGGTCTGGTTGAACCAAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCAGGGTGTTATAACCAGCATTCACGCTGATGGCGAAGTTAGGGTTGTTTTCTTTGGCTTGTCAGCATTATGGAGAGGAGATCCTTCAGATCTACAGATTGAACCAATGTTCGAAGTTGGAGAATGGGTGAGGTTGAAGGATAATGCAAATAGTTGGAAATCGATTGCACCGGGTAGTATTGGTGTTGTACATGGAATAGGGTATGAACAAGACGACTCAGACAGAAGCACTTATGTTGGCTTTTGTGGGGAGCAAGAAAAGTGGGTAGGACCAACCTCCCATCTCGAAAGAGTTGACAAACTCTTTGTTGGACAGAAAGTTAGAGTTAAGCAATGTATAAAGCAACCAAGATTTGGTTGGTCAGGGCACACCCATGCTAGTATTGGAACCATACAAGCAATCGATGCTGATGGAAAGCTCCGAATATACACTCCAGCCGGATCGAAGACATGGATGCTGGACCCATCAGAAGTGGAGGTGGTGGAAGAGAGGGAGCTTCGTATCGGAGACTGGGTAAAAGTTAAAGCGTCAGTTTCAACCCCAATCCACCAGTGGGGAGAGGTGAGTCACTCGAGCATTGGAGTGGTGCACCGGATGGAAGATGGAGATCTGTGGGTGGCATTCTGCTTTATGGAGAGACTCTGGCTTTGCAAGGCATGGGAAATGGAAAGGGTTAGACCATTCAAAGTGGGGGACAAGGTAAAAATTAGAGATGGACTCGTGGCACCGCGCTGGGGATGGGGAATGGAAACGCATGCAAGCAAGGGACAGGTGGTAGGAGTAGACGCAAACGGCAAACTGAGAATAAAGTTCCGGTGGAGGGAAGGTAGGCCTTGGATTGGGGACCCTGCTGATGTTGCCCTTGATGGAAACTAA 4914 0.4766 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCKECLSRMFSASPDATLTCPRCRHVSTVGNSVQALRKNYAVLALIHSAAAGARGAAGGSNFDCDYTDDDDEDEDGGGSGDDEDDYDGDDEEKRRRRCSRASQTSSSGGCEPVIEVGAHPDLKLVRRIGEGRRAGVEMWTAVIGGSGGRCRHQVAVKKVAVMEGMDLEWIQGNLENLRRASMWCRNVCTFHGAMKHEESLCLVMDRCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDSNGHAVVSDYGLATILKKPSCWKARPECDSSKIHSCMECIMLSPHYTAPEAWEPGKKSLNIFWDDAIGISPESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRSVVKAKRLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFNAMLAIFLRHLQEIPRSPPASPDNDFVKRSVSNVTEPTPAPELDVPQEMPNPNHLHRFVSEGDATGVRDLLAKAASENGSDYISSLLESQNVDGQTALHLACRRGSAELVEAILEYKEANVDVLDKDGDPPLVFALAAGSPDCVRCLIKRNANVTSRLRDGLGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCAIVILENGGCRSMAIMNSKNLTPLHLCVATWNVAVVKRWVEVATSDEIAEAIDIPSPIGTALCMAAASKKDHESEGRELVRILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVKVILAAGVDVNICNIHNSIPLHLALARGAKASVGLLLAAGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLRNSDADIEVRNHSGRTLRDILEALPREWISEDLMEALMNRGVHLSPTIFEVGDWVKFKRTVTAPTYGWQGARPKSVGFVQSIQDRDNLIVSFCSGEVHVLANEIVKLIPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTSAKHGLGSVTPGSIGIVYCIRPDSSLLIELSYLPNPWHCEPEEVEHVAPFRIGDRVCVKRSVAEPRYAWGGETHHSVGRISEIENDGLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVRVKASVPAPKYGWEDTNRNSIGVIHSLEEDGDMGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVMPSVSQPRLGWSNESPATVGKIARIDMDGALNLKVTGRQSLWKVSPGDAERLPGFEVGDWVRSKPSLGNRPSYDWNTVGRESLAVVHSVQDSGYLELACCFRKGKWIAHYTDVEKVPSFKIGQYVRFRNGLVEPRWGWRGAQPESQGVITSIHADGEVRVVFFGLSALWRGDPSDLQIEPMFEVGEWVRLKDNANSWKSIAPGSIGVVHGIGYEQDDSDRSTYVGFCGEQEKWVGPTSHLERVDKLFVGQKVRVKQCIKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKTWMLDPSEVEVVEERELRIGDWVKVKASVSTPIHQWGEVSHSSIGVVHRMEDGDLWVAFCFMERLWLCKAWEMERVRPFKVGDKVKIRDGLVAPRWGWGMETHASKGQVVGVDANGKLRIKFRWREGRPWIGDPADVALDGN* 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3068 1637 CDD RING-HC_ScPSH1_like 5 52 - -
Amo10g3068 1637 Gene3D - 739 872 IPR036770 -
Amo10g3068 1637 ProSiteProfiles Ankyrin repeat profile. 739 771 IPR002110 GO:0005515
Amo10g3068 1637 Gene3D - 478 592 IPR036770 -
Amo10g3068 1637 ProSiteProfiles Ankyrin repeat profile. 524 557 IPR002110 GO:0005515
Amo10g3068 1637 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Amo10g3068 1637 ProSiteProfiles Ankyrin repeat profile. 772 804 IPR002110 GO:0005515
Amo10g3068 1637 Pfam Mind bomb SH3 repeat domain 1383 1504 IPR040847 -
Amo10g3068 1637 Pfam Mind bomb SH3 repeat domain 1513 1632 IPR040847 -
Amo10g3068 1637 Pfam Mind bomb SH3 repeat domain 1130 1248 IPR040847 -
Amo10g3068 1637 Pfam Mind bomb SH3 repeat domain 880 998 IPR040847 -
Amo10g3068 1637 Pfam Mind bomb SH3 repeat domain 1256 1377 IPR040847 -
Amo10g3068 1637 Pfam Mind bomb SH3 repeat domain 1060 1124 IPR040847 -
Amo10g3068 1637 SUPERFAMILY Ankyrin repeat 505 817 IPR036770 -
Amo10g3068 1637 SUPERFAMILY Protein kinase-like (PK-like) 147 476 IPR011009 -
Amo10g3068 1637 ProSiteProfiles Ankyrin repeat profile. 558 590 IPR002110 GO:0005515
Amo10g3068 1637 MobiDBLite consensus disorder prediction 92 142 - -
Amo10g3068 1637 Pfam Protein kinase domain 177 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g3068 1637 SMART ANK_2a 772 801 IPR002110 GO:0005515
Amo10g3068 1637 SMART ANK_2a 739 768 IPR002110 GO:0005515
Amo10g3068 1637 SMART ANK_2a 626 657 IPR002110 GO:0005515
Amo10g3068 1637 SMART ANK_2a 699 734 IPR002110 GO:0005515
Amo10g3068 1637 SMART ANK_2a 558 587 IPR002110 GO:0005515
Amo10g3068 1637 SMART ANK_2a 805 840 IPR002110 GO:0005515
Amo10g3068 1637 SMART ANK_2a 661 692 IPR002110 GO:0005515
Amo10g3068 1637 SMART ANK_2a 524 554 IPR002110 GO:0005515
Amo10g3068 1637 SMART ANK_2a 593 622 IPR002110 GO:0005515
Amo10g3068 1637 PRINTS Ankyrin repeat signature 525 540 IPR002110 GO:0005515
Amo10g3068 1637 PRINTS Ankyrin repeat signature 721 735 IPR002110 GO:0005515
Amo10g3068 1637 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 2 1635 - -
Amo10g3068 1637 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Amo10g3068 1637 Gene3D - 593 738 IPR036770 -
Amo10g3068 1637 Pfam Ankyrin repeats (3 copies) 503 587 IPR002110 GO:0005515
Amo10g3068 1637 Pfam Ankyrin repeats (3 copies) 718 803 IPR002110 GO:0005515
Amo10g3068 1637 MobiDBLite consensus disorder prediction 92 116 - -
Amo10g3068 1637 ProSiteProfiles Ankyrin repeat region circular profile. 772 804 - -
Amo10g3068 1637 SUPERFAMILY RING/U-box 5 58 - -
Amo10g3068 1637 ProSiteProfiles Ankyrin repeat region circular profile. 524 546 - -
Amo10g3068 1637 ProSiteProfiles Ankyrin repeat region circular profile. 739 768 - -
Amo10g3068 1637 ProSiteProfiles Protein kinase domain profile. 150 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g3068 1637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Amo10g3068 1637 Gene3D Transferase(Phosphotransferase) domain 1 146 459 - -
Amo10g3068 1637 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 2 1635 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Amo10g3068 1637 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Amo10g3068 1637 SMART ring_2 6 51 IPR001841 -
Amo10g3068 1637 Pfam RING-type zinc-finger 6 49 IPR027370 -
Amo10g3068 1637 Pfam Ankyrin repeats (many copies) 596 645 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3068 Amo-Chr10 96418172 96430177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3068 402 590 MAP Kinase Kinase Kinase AT2G31800 29.146 7.00e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Amo10g3068 Pkinase 2.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3068 K16279 - gmx:100777576 2968.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2869 16 126572177 126574953 Amo10g3068 10 96418172 96430177 PCT
Amo06g2169 06 78019319 78025100 Amo10g3068 10 96418172 96430177 PCT
Amo10g3068 10 96418172 96430177 Amo16g2869 16 126572177 126574953 PCT
Amo10g3068 10 96418172 96430177 Amo06g2169 06 78019319 78025100 PCT