Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3065 ATGGAAGACAAAGACGAGGACAGTAATAACAACAAAAATAACAACCAACATCATCATAACCACCCAAAAGAAGAGCCACTAATAATAAGAAAACACAACACTATTGGGGGCGGGAGTGGCAGCGGCAGCGGCGGCGACAGATTAAAGAGAGATGAGTGGAGTGAAGGAGCGGTTTCCACCCTTCTAGAAGCATACGAATCAAAATGGGTTCTTAGAAACAGAGCAAAGCTCAAAGGCCATGACTGGGAAGAYGTTGCAAGACACGTGTCATCAAGAGCCAACTCTACAAAATCGCCCAAGACACAAACGCAGTGCAAGAACAAGATCGAGTCYATGAAGAAACGCTACAGATCAGAGTCTGCTACCGCTGATGCTTCATCTTGGCCGTTATATTCACGCCTTGATCTTCTCTTGCGTGGGACGGGGCCTGTGCCCACAGCTTCCACGCTTGCAGCTTCGCCACTGCCACTGTCACCAACACTGCAGGCAGTGCCGGTGACAGTGACGGTGGCTGCTGCTGCAGCGACTGGTTCTCATCAGTCGCTACACTTTAGCAATAACCAACAACCTTTGATGTTGTTGGAGCAGCCGCCGTCGTCACAAGCCCTCCATCAACCACCGCCACCTCCTGGTGCTGTTGCTGCTCCTCCACCTCCTGCCACCACTACGCAAAATTCGCATGGATCCAATGGCGTTGAGAGAGTGATAACAAAGGAAGATGGGTTATTGGGAACAAAGTCATGTGAGCATATATCTAACAAGAATGAAGTAGAGACTGATAGCAGCACACCAGCACTGTATAGTGAAAAGGATAAGCTTAGATGCAACAAGAGGAAGATGAAGATGGAGAGCAACAAGCAGCGGCGGCGAAAGGAGGAGATGGAGATAGCAGGAAGCATAAGGTGGCTTGCAGAAGTTGTGGTGAGATCGGAGCAAGCAAGAATGGACACAATGAAGGAGATTGAAAAGATGAGAGTCGAAGCTGAGGCCAAGCGCGCTGAAATGGATCTCAAGAGAACTGAAATCATTGCCAATACACAGTTAGAGATTGCTAGAATCTTCGCAAGTGTTAATAACAAAGGTGTGGATTCATCGCTCAGAATTGGCAGAAGTTAA 1116 0.4812 MEDKDEDSNNNKNNNQHHHNHPKEEPLIIRKHNTIGGGSGSGSGGDRLKRDEWSEGAVSTLLEAYESKWVLRNRAKLKGHDWEDVARHVSSRANSTKSPKTQTQCKNKIESMKKRYRSESATADASSWPLYSRLDLLLRGTGPVPTASTLAASPLPLSPTLQAVPVTVTVAAAAATGSHQSLHFSNNQQPLMLLEQPPSSQALHQPPPPPGAVAAPPPPATTTQNSHGSNGVERVITKEDGLLGTKSCEHISNKNEVETDSSTPALYSEKDKLRCNKRKMKMESNKQRRRKEEMEIAGSIRWLAEVVVRSEQARMDTMKEIEKMRVEAEAKRAEMDLKRTEIIANTQLEIARIFASVNNKGVDSSLRIGRS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3065 371 MobiDBLite consensus disorder prediction 198 232 - -
Amo10g3065 371 MobiDBLite consensus disorder prediction 1 51 - -
Amo10g3065 371 MobiDBLite consensus disorder prediction 1 30 - -
Amo10g3065 371 MobiDBLite consensus disorder prediction 201 217 - -
Amo10g3065 371 Gene3D - 53 118 - -
Amo10g3065 371 MobiDBLite consensus disorder prediction 218 232 - -
Amo10g3065 371 Coils Coil 314 343 - -
Amo10g3065 371 Pfam Myb/SANT-like DNA-binding domain 50 136 IPR044822 -
Amo10g3065 371 Coils Coil 277 297 - -
Amo10g3065 371 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 34 367 - -
Amo10g3065 371 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 34 367 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3065 Amo-Chr10 96359707 96362778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3065 36 353 Trihelix Transcription Factor Family AT3G14180 24.576 4.91e-21 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo10g3065 Myb_DNA-bind_4 9.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3065 - - adu:107471869 627.861