Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3025 ATGGCTCCCTCTAACTATCAACAAAACAAGCATTCTCCTTCTAGTTCTACTGTCATCCGTTTCTTTAAGATTATCGTCAGAGAAAGTCTTCAAGATGAAAACTTTATGTTATCAAAAAAGTTCACCAGAAAATATGGTTCTGGCCTATCAAACCCACTATATCTTAAGCCTCCAGATGGAACTGAATGGAGAGTAAATTGGACCAATCGTAATGGTAGAACTTTGTTTAAAAGAGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATGTGTTATGGTTTGAGTATAATATTGGAACTTCTCACATTGAAGTAGAAATATTTGACATGAGTTGCCTCGAAATAGAGTATCCTGCCAATGATCAGATCAAAAAGCACCCGCCACAACATAGGGGCCAGCCGGTGAAAAGGCCAAAAGAACAACAAACTAGAGATGTGGATAACAGTCCCAACACTCAAAACATGAGACTTAACGAGGGACGGCAGAAGAAAAGATTAAATGAACCACTGTCAGGAGGAGTCCGGGGCCAACCGAGGAAAAAACTGAGAGCACCAGTATCATCTGCTTCTAAAGGTAGACAGTTGGAAAATGACGCACAAATCAGGAAAGGTAAAAGTAATAGAAGAAGAAAAGATTCTGAATCTTCTGTTAGGCCCTATCCTACAAAACCTGAATCTCTGAAAGAAGCTAACAAGTTCAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAAAGCAACTGTCTCAAACAAAAGCACCATGTTACTTTTCAACTAAATTCTTCCGGAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGGTTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTATAGGCCATCATCATGTAATGCCTTTATCTCTGCTGGTTGGAACGTTTTTGCTCGAGCTAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCGTCAACAGAAAAGATCCCGTGCTTGATGTTCATATTTGTCGTCGACAACGTCGCGAGTCACTTTCCAAACCAGTGACTCGTGGAATTCAGCTCCTGAAAGAAGTTAAGGAGCTCAATTCACAGAATCCCTCTTTCATGGTTAAGATAAAAGACAGTGATCCAAGAAGATCAAGGCCTAATTTATCAGCTATCTTCTACAGAAAATATTTTAAAAAGAATCAGCAGAATGTAAAGTTACAGTTCGGAAAGGAGATGTGGCCTGTTACGATAATCTACAATCCGTCGTCAAGAAACACCTTTATTTCGGCTGGTTGGAGCTCTTTTGCTAGAGCAAGTAAATTAGAAACTGGAGATGTTTGTGTTTTTGAGCTCATCAATAAAAAAGATCTATTTAATGTTCATATCTGTAGAGTTCAATGCTAG 1389 0.3852 MAPSNYQQNKHSPSSSTVIRFFKIIVRESLQDENFMLSKKFTRKYGSGLSNPLYLKPPDGTEWRVNWTNRNGRTLFKRGWKEFVAYYSLDHGHVLWFEYNIGTSHIEVEIFDMSCLEIEYPANDQIKKHPPQHRGQPVKRPKEQQTRDVDNSPNTQNMRLNEGRQKKRLNEPLSGGVRGQPRKKLRAPVSSASKGRQLENDAQIRKGKSNRRRKDSESSVRPYPTKPESLKEANKFKWEKPSFIIKIKQLSQTKAPCYFSTKFFRKYFENNPQNANIRFGKKLFPVKLIYRPSSCNAFISAGWNVFARASKLQAGDVCLFKLVNRKDPVLDVHICRRQRRESLSKPVTRGIQLLKEVKELNSQNPSFMVKIKDSDPRRSRPNLSAIFYRKYFKKNQQNVKLQFGKEMWPVTIIYNPSSRNTFISAGWSSFARASKLETGDVCVFELINKKDLFNVHICRVQC* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3025 462 MobiDBLite consensus disorder prediction 124 231 - -
Amo10g3025 462 SMART B3_2 243 338 IPR003340 GO:0003677
Amo10g3025 462 SMART B3_2 367 461 IPR003340 GO:0003677
Amo10g3025 462 SMART B3_2 21 114 IPR003340 GO:0003677
Amo10g3025 462 MobiDBLite consensus disorder prediction 199 221 - -
Amo10g3025 462 ProSiteProfiles B3 DNA-binding domain profile. 408 461 IPR003340 GO:0003677
Amo10g3025 462 SUPERFAMILY DNA-binding pseudobarrel domain 241 337 IPR015300 -
Amo10g3025 462 SUPERFAMILY DNA-binding pseudobarrel domain 360 460 IPR015300 -
Amo10g3025 462 SUPERFAMILY DNA-binding pseudobarrel domain 18 121 IPR015300 -
Amo10g3025 462 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 345 460 - -
Amo10g3025 462 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 336 - -
Amo10g3025 462 ProSiteProfiles B3 DNA-binding domain profile. 20 114 IPR003340 GO:0003677
Amo10g3025 462 Pfam B3 DNA binding domain 381 460 IPR003340 GO:0003677
Amo10g3025 462 Pfam B3 DNA binding domain 21 112 IPR003340 GO:0003677
Amo10g3025 462 Pfam B3 DNA binding domain 257 338 IPR003340 GO:0003677
Amo10g3025 462 Gene3D - 351 461 IPR015300 -
Amo10g3025 462 Gene3D - 224 339 IPR015300 -
Amo10g3025 462 CDD B3_DNA 258 336 IPR003340 GO:0003677
Amo10g3025 462 CDD B3_DNA 365 459 IPR003340 GO:0003677
Amo10g3025 462 Gene3D - 14 115 IPR015300 -
Amo10g3025 462 ProSiteProfiles B3 DNA-binding domain profile. 284 338 IPR003340 GO:0003677
Amo10g3025 462 MobiDBLite consensus disorder prediction 124 147 - -
Amo10g3025 462 CDD B3_DNA 20 112 IPR003340 GO:0003677
Amo10g3025 462 PANTHER B3 DOMAIN-CONTAINING 345 460 - -
Amo10g3025 462 PANTHER B3 DOMAIN-CONTAINING 14 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3025 Amo-Chr10 95949150 95952347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3025 354 452 B3 DNA Binding Superfamily AT3G18990 33.000 2.31e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3025 B3 7.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3025 - - adu:107471893 759.985