Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3024 ATGGCTTCCTCTATTTCCTCTGATATCCGTTTCTTCAAGATTGGTCTCAAAAAAAGCCTTGAAGATGGAAACCTTAAGTTAACAAAAAAGTTCAGTAAGGAATATGGTGATAGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTTTGTATGATGGTTTGATTCAATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATAATGGCCATCTGCTGCAATTTGCGTACAATGAAACTTCTAACATTGAAGTACAAATTTTTGACATCATTGATGGCTATGAAATCAACTATCCTTCCTTGGATCACATCGGCGATGACAATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAAAACTGAAAGCAGCAGCAGAAGTATCTTCTCCTTCTACAAGTAAAATATTGAGGAGTTCTGTCAAAACTGGAGATGTAGAAAAGGGCCCTGATAAACAAAACTGGATGCAGTGTTGCAACAATGAAGAAGCTAGTCAATCTGAAGAGACAGGTCTTAAGAATTAA 573 0.3857 MASSISSDIRFFKIGLKKSLEDGNLKLTKKFSKEYGDSVPNPVYLKPPDGTAWKIDWSLYDGLIQFENGWKEFASYYSLDNGHLLQFAYNETSNIEVQIFDIIDGYEINYPSLDHIGDDNSIEILNELPPRGWPRKKLKAAAEVSSPSTSKILRSSVKTGDVEKGPDKQNWMQCCNNEEASQSEETGLKN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3024 190 CDD B3_DNA 10 101 IPR003340 GO:0003677
Amo10g3024 190 MobiDBLite consensus disorder prediction 139 190 - -
Amo10g3024 190 PANTHER B3 DOMAIN-CONTAINING 7 181 - -
Amo10g3024 190 SUPERFAMILY DNA-binding pseudobarrel domain 5 101 IPR015300 -
Amo10g3024 190 MobiDBLite consensus disorder prediction 170 190 - -
Amo10g3024 190 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Amo10g3024 190 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 181 - -
Amo10g3024 190 Gene3D - 4 102 IPR015300 -
Amo10g3024 190 Pfam B3 DNA binding domain 13 101 IPR003340 GO:0003677
Amo10g3024 190 SMART B3_2 11 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3024 Amo-Chr10 95947600 95948413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3024 10 124 B3 DNA Binding Superfamily AT4G01580 36.134 3.69e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g3024 B3 2.3e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3024 - - adu:107471775 338.191