Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3020 ATTAAACTTCCCTGCTGTTTTAAGCAGCTGGAAAGCAGCACAGACTTCTGCAGCTCAGATTCAAAAACTTCTCTAACTGTTCCGTCTTCCGACTGGCTGGATTCCTTCCCGGCCTTAACCGTGCTGAGTTTAAAGACTAATTCATTCAACGGTTCCTTCCTGATTCGCTCGTTGGTTACTTTAGTGCTAAGAAACAACAAGTTTAGATCTAATATCCCTGATGAATTAAGCTCATACTATCAGCTCGAACGATTCGATATCTCTTCGAATTCTTTCGTTGGGCCCTTCCAGCTGCAACTGTTATCACTTCCATCTATTACTTATCTAAACATTTCTGGAAACAGATTAACAGGAATGCTTTATGATAATGTTTCTTGCAACTCTCAACTCCAAGCAGTGGATTTATCCTCAAATCTTTTGGCTGGAAGCTTACCAAAATGTTTGGAGTCGAATTCGAATGGAAGGAGTGTCCGGTATGCTGGGAATTGTCTCGAGGAGACGGATCAAGATCAACACGAATCGTCTTTTTGCCACACTGAAGCCATAGCAGTGGGAATATTGTTACCTGAAAGGAAGAGGCACAGAAGAGTGTCTAAGGCAGTTCTTTCAAGTGTGATAATTGGTGGAATTTTTGGACTTGTAGCTGTTTTTTCATTGATTTTGTTTATTGTTAGAAGAGGAAATTCCAAAAGCAAAGTGAAGAAGAATCCTCCAACAAAATTGATATCAGAAAATGCAGCTTCTGGATACACCACTAAGCTACAATCTGATGCAAGGTATGTATCTCAAACAATGAAGTTTGGATCTGTTGGTCTGCCACCTTATCGAGCTTACTCACTGGAAGAGATTGTGGTAGCTACAAACAATTTTGACTCAGCTCGTTTCATGGGTGAAGGTTCTCAAGGACAGATGTACAGAGGTCAACTTAGGGATGGTTCACTTGTTGCCATAAGATACTTTATGCACTACATAGAGCTGATATCAAAGTATAGGCATCTCCACTTAGTCAGTGCCCTTGGACACTGCTTTGAATGCTATTTAGATGATTCAAATGGACATTATAGAAAATCACTGAGCTGGACACAACGGATAGCAGCTTCAATTGGAGTAGCAAAGGGAATTGAATTTTTGCATACAGGGCTTATAACTGATGTTTTATTGGATCAGAATTTTGTTGCAAAAATCAGCAGTTACAACCTACCTTTGTTATCTAATATTGTAAAGAGTGGAAGTGGAAATCTTTCCATTGGATTCAGAAGTCCAAGCTTTAAACAAAGTTTAAGATATGAAGATAAGTCAGATATTTATGACTTTGGAATAATACTACTTGAACTCATTCTTGGAAGGACAATAAAACCAAGGAATGTAGACACCTTAAAGGACCTGTTGCAAGCAAGCATAACATCAAACGATGAAGCTCGAATGAGCATCATAGATCCGGCGATTCGCAAGGCGTGCTTGGATCAATCACTGAAGACAATGATGGAGGTGTGCGTGAGGTGCCTGGCTAAAGATCCATCAGAGAGACCCTCAATAGAGGATGTTCTATGGAACTTGCAGTTTGCTGCTCAAGTCCAAGATGCATGGAGAGTTGACTCTCAAAGTCAAAGCAGTGATGGCTCTTCCATATCACCTTTGGCGTCGCCACCAATGAACTTCCATTAG 1665 0.4042 IKLPCCFKQLESSTDFCSSDSKTSLTVPSSDWLDSFPALTVLSLKTNSFNGSFLIRSLVTLVLRNNKFRSNIPDELSSYYQLERFDISSNSFVGPFQLQLLSLPSITYLNISGNRLTGMLYDNVSCNSQLQAVDLSSNLLAGSLPKCLESNSNGRSVRYAGNCLEETDQDQHESSFCHTEAIAVGILLPERKRHRRVSKAVLSSVIIGGIFGLVAVFSLILFIVRRGNSKSKVKKNPPTKLISENAASGYTTKLQSDARYVSQTMKFGSVGLPPYRAYSLEEIVVATNNFDSARFMGEGSQGQMYRGQLRDGSLVAIRYFMHYIELISKYRHLHLVSALGHCFECYLDDSNGHYRKSLSWTQRIAASIGVAKGIEFLHTGLITDVLLDQNFVAKISSYNLPLLSNIVKSGSGNLSIGFRSPSFKQSLRYEDKSDIYDFGIILLELILGRTIKPRNVDTLKDLLQASITSNDEARMSIIDPAIRKACLDQSLKTMMEVCVRCLAKDPSERPSIEDVLWNLQFAAQVQDAWRVDSQSQSSDGSSISPLASPPMNFH* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3020 554 Gene3D Ribonuclease Inhibitor 3 183 IPR032675 -
Amo10g3020 554 MobiDBLite consensus disorder prediction 534 554 - -
Amo10g3020 554 Gene3D Transferase(Phosphotransferase) domain 1 346 531 - -
Amo10g3020 554 SUPERFAMILY L domain-like 21 167 - -
Amo10g3020 554 Gene3D Phosphorylase Kinase; domain 1 250 345 - -
Amo10g3020 554 ProSiteProfiles Protein kinase domain profile. 200 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo10g3020 554 PANTHER OS07G0166700 PROTEIN 36 545 IPR045272 GO:0004714|GO:0006468
Amo10g3020 554 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 36 545 - -
Amo10g3020 554 Pfam Protein tyrosine and serine/threonine kinase 354 516 IPR001245 GO:0004672|GO:0006468
Amo10g3020 554 SUPERFAMILY Protein kinase-like (PK-like) 269 526 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3020 Amo-Chr10 95910765 95915521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3020 39 554 Miscellaneous Gene Families AT3G03770 54.130 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Amo10g3020 PK_Tyr_Ser-Thr 2.6e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3020 - - gmx:100813207 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3668 20 147203969 147207355 Amo10g3020 10 95910765 95915521 hybridization