Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2966 ATGGTGTATTGTGATCACTGTGTCCAAAATGTTAGTGCGTTGAGAACTGATTATGGTTCTTTATGTTGTGGCACATGTGGTAAGGTGTTGCAAGATTATCTTTTTTCTGAAGAGGCCACATTTGTGAAAAATTCATCTGGACAGAGCCAATTATCTGGCCATTATGTCAGAACAATTCAAAGCGAATTCTCTGCCTCACGTCAAAGGACTATAGATAGAGCTTTTGAGGAGATCAAATACTTAAGTTATGGCCTTGGAGTGAACGATGATAACATGACCGTGCAAGCTGTGGCCTTTTATAGAATAGCACTTGAGCGGAATTTTACCCGGGGACGTAAATCAGAGCAAGTGCAGGCTGCTTGTCTTTATATTGCATTCCGGGAAAATAATAAGCCATACCTTCTCATTGATTTTTCAAATTATTTAAGGATAAATGTTTATGTTCTAGGTGCAGTTTTTTTACAGCTGTGTAAAGTATTAAGGCTCGAAGAGCACCCAATTGTTCAGAAGCCTGTTGATCCCAGTCTTTTTATTTATAAATACACAAATAATTTGTTAAAGGAAAGGAACTTGGTTGTCTCTGAAACCGCGCTGAGTATTATTGCTAGCATGAAACGTGACTGGATGCAGACAGGGAGAAAGCCAAGCGGATTATGTGGTGCAGCATTATATATGTCTGCTCTTGCAAATGGTTTTAAGTGCTCTAAGTCAGACATTCTAAGAATCGTCCATATATGTGAAGCAACTTTGACTAAGCGGTTGGTAGAGTTTGAGAATACAGAGTCTGCTAGCTTGACAATTGAGGAGTTGAATACAATGGCAAAAGAGCATGAAAAGCAGCCAATTAAAGTACCAAATGGTGAATTGAACAAATGTACTTCCGAAGATCTACTATGTGAGCACAAGGGTACTGCTGTGCCTTATTTTGCACTTGGATTGTGTGAAACATGTTACAAGGATTTTGATAAACTCTCTGGTGGACTTGATGGTGGCTTGGATCCTCCTGCTTTCCAGCGTGCTGAGAGGGAGAGAAGGGTAAAATCAGATTCTGAGGAAAGTGCCAATAGAACAGATGATATGGTGAAAGCATCAAATGGTGAACATGGAAGCCAAAAAGAGGGATTACATGCCTCAGAGCCAAAAAGTGTTGGAGATAATTATGAGCACACAGCCACTAAAGATGGCAACCTTGATGAATCACATGAAGATGATATGAAGACTAAAACTCATGATGACTCAGAAAGTTTATCTGATATTGATGATCTAGAGGTTGATAGCTACCTTCACAATGAGGAGGAAAAACATTACAAGAAGATTATATGGGAAAATATGAATCGAGAATATCTTGAGGAACAAGCAGCTAAGGAAGCAGCTGCTGCAGCTGCTAAGAAATTTGCTGAGGCAAATTGTTCCGAAGAGGAGCTAGCAGCAAGAGAATTTGCGAAATCGGCTGCTGATGCTGTGGCAAAGTCCAGAAAGGAAATGAGACAAAAACGAGCTCAAGAGGCCAAAAATTCTGGTCCTGCTCAATCTGCTATAGAGGCCACCCGGCAGATGTTGAGAACAAAGGAAAAACTAAAGGATGATGATGCAGTAGGAGTAGAAGATGAAGTTGAGGATGGTGACATGACTGGAGAATATGAAGATAATATGTATCAGGAAAATGGAGATGAGGCATATGAGGATGAATATTATGACGATGGTGATTATTGA 1713 0.3999 MVYCDHCVQNVSALRTDYGSLCCGTCGKVLQDYLFSEEATFVKNSSGQSQLSGHYVRTIQSEFSASRQRTIDRAFEEIKYLSYGLGVNDDNMTVQAVAFYRIALERNFTRGRKSEQVQAACLYIAFRENNKPYLLIDFSNYLRINVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKYTNNLLKERNLVVSETALSIIASMKRDWMQTGRKPSGLCGAALYMSALANGFKCSKSDILRIVHICEATLTKRLVEFENTESASLTIEELNTMAKEHEKQPIKVPNGELNKCTSEDLLCEHKGTAVPYFALGLCETCYKDFDKLSGGLDGGLDPPAFQRAERERRVKSDSEESANRTDDMVKASNGEHGSQKEGLHASEPKSVGDNYEHTATKDGNLDESHEDDMKTKTHDDSESLSDIDDLEVDSYLHNEEEKHYKKIIWENMNREYLEEQAAKEAAAAAAKKFAEANCSEEELAAREFAKSAADAVAKSRKEMRQKRAQEAKNSGPAQSAIEATRQMLRTKEKLKDDDAVGVEDEVEDGDMTGEYEDNMYQENGDEAYEDEYYDDGDY* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2966 570 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Amo10g2966 570 Pfam Transcription factor TFIIB repeat 69 157 IPR013150 GO:0017025
Amo10g2966 570 MobiDBLite consensus disorder prediction 336 366 - -
Amo10g2966 570 MobiDBLite consensus disorder prediction 503 517 - -
Amo10g2966 570 Pfam Brf1-like TBP-binding domain 417 524 IPR011665 -
Amo10g2966 570 Gene3D - 173 265 - -
Amo10g2966 570 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Amo10g2966 570 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Amo10g2966 570 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Amo10g2966 570 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 526 IPR000812 GO:0006352|GO:0070897
Amo10g2966 570 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 526 IPR029529 GO:0000126|GO:0000995|GO:0006383
Amo10g2966 570 SUPERFAMILY Cyclin-like 172 269 IPR036915 -
Amo10g2966 570 MobiDBLite consensus disorder prediction 518 532 - -
Amo10g2966 570 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Amo10g2966 570 CDD CYCLIN 173 248 IPR013763 -
Amo10g2966 570 Coils Coil 260 280 - -
Amo10g2966 570 Gene3D Single helix bin 408 459 - -
Amo10g2966 570 MobiDBLite consensus disorder prediction 372 415 - -
Amo10g2966 570 Gene3D - 64 165 - -
Amo10g2966 570 MobiDBLite consensus disorder prediction 489 570 - -
Amo10g2966 570 MobiDBLite consensus disorder prediction 329 417 - -
Amo10g2966 570 MobiDBLite consensus disorder prediction 533 570 - -
Amo10g2966 570 CDD CYCLIN 96 144 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2966 Amo-Chr10 95268177 95278486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2966 1 526 Inorganic Solute Cotransporters AT2G01280 40.678 1.11e-107 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2966 K15196 - gmx:100789154 700.664