Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2961 ATGGTTCCCTCTAACTGTCAACAAAACAAGCATTCTCCTTCTAATTCTACTGTGATCCGTTTCTTTAAGGTTATCCTCAGAAAAACTCTTCAAGATGAAAACTTTAAGTTACCAAAAAAGTTCACCAGAATATATGGTTCTGGTCTATCAAACCCGTTGTATCTTAAGCCTCCTGATGGTACTGAATGGAGAGTAGATTGGATCAATCAAGATGGTGGAATTTTGTTTAAACAAGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATGATGGCTATGTGTTATGGTTTGAGTATAATATTGGAACTTCTCACATTGAAGTACAAATATGTGACATGAGTGGCCTCCAAATAAAGTATCCTGTCAATGATCAGATCAAAGAGCACCCGCCACAACACAGGGGCCATCCGGTGAAAAGGCCAAAAGAACAACAAACTATAGACGTGGATAACAGTCCCAACACTCAAAACATGAGACTTAACGAGGGACGGCAGGAGAAAAGATTGAATGAACCAATGTCAGGAGTCGGGGGCCAATCGAGGAAAAAACTGAGAGCACCAGTGTCATCTGCTTCTAAAGGTAGACAGTTGGAAAGTGACACACAAATCAGAGAAAGTATTAAATCTAAAAAGAAAAACCATAAGATGCCTGTCAATCAAGATTCTAATGGCAAAAGAAATAGAAAAAGAAAAGATTCTGAATCTTCTGTTAGGCCCTGTCTTGCAAGACCTAAATCTCTGAAAGAAGCTAAGTTCAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAAAGCAACTGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTTCAGGAAGTATTTTGTAAATAATCCACAAAATGCAAATATAAGGTTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTATAGGCCATCATCATGTGATGCCTTTATCTCTGCTGGTTGGAACTTTTTTGCTCGAGCTAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCGTCAATAGAAAAGATCCAGTGCTTGATGTTCATATTTGTCGTCGACAACGCCGCGAGTCACTTTCCAAACCAGTGACTCATGGGATTCAGCTCCTGAAAGAAGTTGAGGAGCTCAATTCACAGAATCCCTCTTTCATGGTCAAGATAAAAGACAGTGATCCAAGAAGATCAAGGCCTAACTTATCAGCTATCTTCTACAGAAAATATTTTAAAAAGAATCAGCAGAATGTAAAGTTACAGTTCGGAAAGYAGTTGTGGCCTGTTACGATAATCTACAATCCGTCGTCAAGAAACACCTTTATTTCGGCTGGTTGGAGCTCTTTTGCTAGAGCAAGTAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGCTCATCAATAAAAAAGATCTGTTTAATGTTCATAAGTTAACAAAAAAGTTCAGTAAGAAATATGGTGATAGTCTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCATGGAAGATAGATTGGTCTTTGTATGATGGTGTGATTCTATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATAATGGCCATATGCTGTATTTTGAGTACAATGAAACTTCTAACATTGAAGTACGCATTTTTGACATCATTAGTGGCTCTGAAATAGACTATCCTTCCTTGGATCACATCGGCCATGACAATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAGAAGTATCATCTCCTTCTACAAGTAAAAGATTGAGGAGTTCTGTCAAAACTGGAGATGTAGAAAAGGGCCCTGATGAACAAAACTGGATGCAGTGTTGCAAGAATGAAGAAGCTAGTCAATCTGAAGAGACAAGTCTTAAGATGCCAACAATTCAAAGTGCCAGAGTTGATCCTGATAGTATGTAA 1938 0.3854 MVPSNCQQNKHSPSNSTVIRFFKVILRKTLQDENFKLPKKFTRIYGSGLSNPLYLKPPDGTEWRVDWINQDGGILFKQGWKEFVAYYSLDDGYVLWFEYNIGTSHIEVQICDMSGLQIKYPVNDQIKEHPPQHRGHPVKRPKEQQTIDVDNSPNTQNMRLNEGRQEKRLNEPMSGVGGQSRKKLRAPVSSASKGRQLESDTQIRESIKSKKKNHKMPVNQDSNGKRNRKRKDSESSVRPCLARPKSLKEAKFKWEKPSFIIKIKQLSQTRAPCYFSTKFFRKYFVNNPQNANIRFGKKLFPVKLIYRPSSCDAFISAGWNFFARASKLQAGDVCLFKLVNRKDPVLDVHICRRQRRESLSKPVTHGIQLLKEVEELNSQNPSFMVKIKDSDPRRSRPNLSAIFYRKYFKKNQQNVKLQFGKXLWPVTIIYNPSSRNTFISAGWSSFARASKLEAGDVCVFELINKKDLFNVHKLTKKFSKKYGDSLPNPVYLKPPDGTAWKIDWSLYDGVILFENGWKEFASYYSLDNGHMLYFEYNETSNIEVRIFDIISGSEIDYPSLDHIGHDNSIEILNELPPRGWPRKTEVSSPSTSKRLRSSVKTGDVEKGPDEQNWMQCCKNEEASQSEETSLKMPTIQSARVDPDSM* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2961 645 MobiDBLite consensus disorder prediction 122 240 - -
Amo10g2961 645 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 352 - -
Amo10g2961 645 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 475 627 - -
Amo10g2961 645 ProSiteProfiles B3 DNA-binding domain profile. 300 354 IPR003340 GO:0003677
Amo10g2961 645 CDD B3_DNA 476 548 IPR003340 GO:0003677
Amo10g2961 645 ProSiteProfiles B3 DNA-binding domain profile. 20 114 IPR003340 GO:0003677
Amo10g2961 645 SUPERFAMILY DNA-binding pseudobarrel domain 15 114 IPR015300 -
Amo10g2961 645 SUPERFAMILY DNA-binding pseudobarrel domain 376 474 IPR015300 -
Amo10g2961 645 CDD B3_DNA 381 472 IPR003340 GO:0003677
Amo10g2961 645 MobiDBLite consensus disorder prediction 198 240 - -
Amo10g2961 645 CDD B3_DNA 20 112 IPR003340 GO:0003677
Amo10g2961 645 PANTHER B3 DOMAIN-CONTAINING 14 352 - -
Amo10g2961 645 PANTHER B3 DOMAIN-CONTAINING 362 473 - -
Amo10g2961 645 MobiDBLite consensus disorder prediction 616 645 - -
Amo10g2961 645 ProSiteProfiles B3 DNA-binding domain profile. 424 477 IPR003340 GO:0003677
Amo10g2961 645 MobiDBLite consensus disorder prediction 126 146 - -
Amo10g2961 645 CDD B3_DNA 274 352 IPR003340 GO:0003677
Amo10g2961 645 Gene3D - 244 355 IPR015300 -
Amo10g2961 645 Gene3D - 367 473 IPR015300 -
Amo10g2961 645 MobiDBLite consensus disorder prediction 580 645 - -
Amo10g2961 645 SMART B3_2 383 470 IPR003340 GO:0003677
Amo10g2961 645 SMART B3_2 259 354 IPR003340 GO:0003677
Amo10g2961 645 SMART B3_2 471 550 IPR003340 GO:0003677
Amo10g2961 645 SMART B3_2 21 114 IPR003340 GO:0003677
Amo10g2961 645 Pfam B3 DNA binding domain 21 112 IPR003340 GO:0003677
Amo10g2961 645 Pfam B3 DNA binding domain 274 354 IPR003340 GO:0003677
Amo10g2961 645 Pfam B3 DNA binding domain 397 468 IPR003340 GO:0003677
Amo10g2961 645 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 362 473 - -
Amo10g2961 645 SUPERFAMILY DNA-binding pseudobarrel domain 253 353 IPR015300 -
Amo10g2961 645 PANTHER B3 DOMAIN-CONTAINING 475 627 - -
Amo10g2961 645 ProSiteProfiles B3 DNA-binding domain profile. 478 550 IPR003340 GO:0003677
Amo10g2961 645 Gene3D - 14 115 IPR015300 -
Amo10g2961 645 Gene3D - 474 549 IPR015300 -
Amo10g2961 645 SUPERFAMILY DNA-binding pseudobarrel domain 473 548 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2961 Amo-Chr10 95135619 95140051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2961 473 559 B3 DNA Binding Superfamily AT3G18990 39.080 2.27e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo10g2961 B3 7.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2961 - - adu:107471893 743.806