Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2959 ATGTTAATGGCAGAAGAGACAGTTCCCAGAAAAGCCAGCTGCTCCAACGACCCACTTATCCAATGCGCCGACCTCATCCTTCCATGGCTAACCCCACCGGAACTCGCCACCGTCTCCATAACCTCTACATCCCTCCACAAGGCCTCCGCCTCCATCACCACCCGCCGATCCTCCGACGCTTCTAGAACCTTCGAGAACCTTCCAGTCCCTTTCCGCAACACCGTCGACCACTACCCCTACGCCTACTTCCTCTACACCCCTTCCCTCATCCTTCCCTCCGCCGCATCCCGCCTCCTCCGCCAACCCTGGGGAMCCGCTGCTCCTCTCGCCTCCGCGCCGAGTCGGATCCCCGCGGAATCGGTGAGTTTGGTCGACGAGTTAGGTCAGAGTGTGTTGTCTGGTTGCGACTGCGAGGCTTGTGGCGGTGTGGGTTCCGACTGRCCTTGTTTGGGCTTGGGTGGGCTGGATGACGTGGGCAGTGAGTGCGGGCCGGGATGTGGGTGCGGACCAGAGTGCGGAAACCGGTTGACTCAGAATGGGYTTGCTGTTCGGGTGAAGATTGTGAGGGATGCAAGGAAAGGGTGGTGTTTGCATTCTGACCAGTGGATTCGGAAAGAGGAGTTCTTGTTTGAGTATGCAGTGTATCCAATACATCATACGAATGTAAAACTGATTCATGGTTTCCTGCTTGGAAAAGGCGAACTCTTGACAACCAAGGAAGCGCGGAGGAGACATCAATGTTATGATGAAAAATCATCACATGGTAGATTCTCTTCTGCACTTTTGGTTGTAAGGGAACATCTTCCATCTGGAAACGTATGCTTGAGATTGAATATTGATGCCACAAGAATAGGAAATGTTGCCCGGTTTGTTAATCATTCTTGTGATGGTGGTAACTTGAGCACAAAGCTAATTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTCTGCTTCTTTGCTTCGAAAGATATCCAGACAGATGAAGAGCTTACATTTAGCTATGGAGAAATCAGGAAAAAGGCCAATGGTCTGCCATGCTTTTGCAGTAGCCCTTCATGCTTTGGAACTTTGCCTTCGGAAGACACTTGA 1086 0.5175 MLMAEETVPRKASCSNDPLIQCADLILPWLTPPELATVSITSTSLHKASASITTRRSSDASRTFENLPVPFRNTVDHYPYAYFLYTPSLILPSAASRLLRQPWGXAAPLASAPSRIPAESVSLVDELGQSVLSGCDCEACGGVGSDXPCLGLGGLDDVGSECGPGCGCGPECGNRLTQNGXAVRVKIVRDARKGWCLHSDQWIRKEEFLFEYAVYPIHHTNVKLIHGFLLGKGELLTTKEARRRHQCYDEKSSHGRFSSALLVVREHLPSGNVCLRLNIDATRIGNVARFVNHSCDGGNLSTKLIRSSGALFPRLCFFASKDIQTDEELTFSYGEIRKKANGLPCFCSSPSCFGTLPSEDT* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2959 361 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 350 - -
Amo10g2959 361 Gene3D SET domain 37 342 IPR046341 -
Amo10g2959 361 SUPERFAMILY SET domain 66 354 IPR046341 -
Amo10g2959 361 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 350 - -
Amo10g2959 361 ProSiteProfiles SET domain profile. 183 334 IPR001214 GO:0005515
Amo10g2959 361 ProSiteProfiles Post-SET domain profile. 341 357 IPR003616 -
Amo10g2959 361 Pfam SET domain 194 334 IPR001214 GO:0005515
Amo10g2959 361 SMART set_7 183 340 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2959 Amo-Chr10 95062030 95065029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2959 161 356 C2H2 Transcription Factor Family AT2G23740 30.542 6.90e-18 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo10g2959 SET 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2959 K11433 - gmx:100786871 461.84