Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2958 ATGGCTGAGCCACAAGGCGGTGGTGCTGAAGGAAGCAGGCGTAGAAGCACTAGTGCCGCAAGGCGTGGCGCGGCGGCGCCAACGCAAGAGGGAGCGCCGCCGCCATCTCCGAGTAGTCCATGCGGGGCTTGCAAGTTCTTGAGGAGGAAGTGTGTTGCAGGGTGCATCTTTGCACCCCACTTTAGCTCGGACCAAGGTGCCGCTAAGTTTGCGGCGGTTCACAAGGTGTTTGGTGCTAGCAATGTGTCGAAGCTTTTGTTGCATGTTCCGGCACACCGCCGCAATGAAGCGGTGGCGACTATTTGTTACGAGGCTCAGGCAAGGCTATCTGATCCGGTTTATGGTTGTGTGTCCACCATTCTCTCTTTGCAACAACAGGTGGCATCTTTGCAAGCAGAGGTGGCTATGACTCAAACTCAAGTGATGAATGGAAGGATTGCATATGCAAGTGTTCTTGACACCACCCAGCAGCAGCAGCAGCCGCAACAACAAGCACTACAGCATCACCACCCAAACATGATGATCAACAATTTGGGGCTGTATCCAGCATTCTCAAACAGCTCATCTGCCTCCACAACTAACCTTATGAACATCACCAACTTCAACCCTGCTACCGGTGGTTTCGACCTCTCAATGGAGGCGGCAACAGCACCCTCATCGTCTCACAGCATTCATCCACTTCATCATAATAGCAATTTCTCTCGCTTGTCTCAATATGATGATGATGATGAACAAGAAAGCAAGATTCCTCCGGTCTTTAACCCTGATCTMTAG 774 0.5168 MAEPQGGGAEGSRRRSTSAARRGAAAPTQEGAPPPSPSSPCGACKFLRRKCVAGCIFAPHFSSDQGAAKFAAVHKVFGASNVSKLLLHVPAHRRNEAVATICYEAQARLSDPVYGCVSTILSLQQQVASLQAEVAMTQTQVMNGRIAYASVLDTTQQQQQPQQQALQHHHPNMMINNLGLYPAFSNSSSASTTNLMNITNFNPATGGFDLSMEAATAPSSSHSIHPLHHNSNFSRLSQYDDDDEQESKIPPVFNPDL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2958 257 Coils Coil 120 140 - -
Amo10g2958 257 MobiDBLite consensus disorder prediction 217 234 - -
Amo10g2958 257 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 247 - -
Amo10g2958 257 MobiDBLite consensus disorder prediction 217 257 - -
Amo10g2958 257 Pfam Lateral organ boundaries (LOB) domain 40 138 IPR004883 -
Amo10g2958 257 MobiDBLite consensus disorder prediction 1 39 - -
Amo10g2958 257 MobiDBLite consensus disorder prediction 235 249 - -
Amo10g2958 257 ProSiteProfiles LOB domain profile. 39 141 IPR004883 -
Amo10g2958 257 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 13 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2958 Amo-Chr10 95059138 95061448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2958 1 247 AS2 family AT3G03760 49.042 3.13e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo10g2958 LOB 2.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2958 - - gra:105761491 246.128