Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2943 ATGGCATCAATGTCGGCCTCAGGTTCATGGAGTGCCAAGGACAACAAGGCCTTTGAGAGGGCACTGGCTGTCTATGACAAGGACACTCCTGACCGTTGGAATAACGTCGCCAACGCTGTTGGCGGCGGCAAGACCCCCGACGACGTCAAGACCCACTATGAGCTTCTTCTTCGAGATATTAAGTTCATTGAATCTGGCCAAGTTCCATTTCCATACCACAAAAATCTTAATCCAACCTCTCAACAAGAAGATGACAACAATAGGCTTAAGAATCTAAAGCTAAATTAA 288 0.4653 MASMSASGSWSAKDNKAFERALAVYDKDTPDRWNNVANAVGGGKTPDDVKTHYELLLRDIKFIESGQVPFPYHKNLNPTSQQEDDNNRLKNLKLN* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2943 95 Pfam Myb-like DNA-binding domain 8 54 IPR001005 -
Amo10g2943 95 ProSiteProfiles SANT domain profile. 5 61 IPR017884 -
Amo10g2943 95 ProSiteProfiles Myb-like domain profile. 8 57 IPR001005 -
Amo10g2943 95 SUPERFAMILY Homeodomain-like 8 65 IPR009057 -
Amo10g2943 95 CDD SANT 9 57 IPR001005 -
Amo10g2943 95 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 94 IPR044636 GO:0003700
Amo10g2943 95 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 2 94 - -
Amo10g2943 95 Gene3D - 2 70 - -
Amo10g2943 95 MobiDBLite consensus disorder prediction 72 95 - -
Amo10g2943 95 SMART sant 6 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2943 Amo-Chr10 94852241 94853330 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo10g2943 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2943 - - gmx:100804396 132.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3492 20 144913608 144916837 Amo10g2943 10 94852241 94853330 hybridization
Amo10g2943 10 94852241 94853330 Amo14g3832 14 143807665 143818074 PCT
Amo14g3833 14 143818729 143820682 Amo10g2943 10 94852241 94853330 PCT