Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2932 ATGGCTCCACCGAAGACGAGAATAGGGCTTGCAGGGCTTGCTGTAATGGGGCAAAATCTTGCTCTCAACATAGCTGAGAAGGGCTTTCCCATTTCAGTATACAACAGAACCACATCCAAGGTTGATGAGACTGTGGAACGAGCGAAGCAGGAAGGAAATCTTCCTGTTTACGGCTACCATGACCCCGAATCCTTTGTTCAGTCCATTCAGAAGCCTAGGGTCATAATAATGCTGGTTAAGGCCGGTGCACCCGTGGACCAAACCATTAAGACCCTTTCGGGATACTTGGAGAAAGGGGACTGCATCATTGATGGTGGTAATGAATGGTATGAGAACACTGAGAGAAGAGAGAAAGCTATGGCTGAATTAGGCCTTCTCTACCTTGGGATGGGAGTTTCGGGTGGCGAGGAGGGTGCTCGCAATGGTCCCTCTTTGATGCCTGGTGGTTCCTTTGAGGCCTACAAATACATAGAAGACATTCTTCTCAAAGTGGCAGCTCAAGTCCCCGACAGCGGCCCATGTGTGACATATGTTGGTAAAGGTGGATCCGGTAACTTTGTTAAGATGATCCATAATGGAATTGAATATGGTGATATGCAACTAATCGCCGAGGCTTATGATGTGCTAAAATCCGTCGGGAAGTTATCAAATGAGGAACTACAAAATGTCTTTGCAGAATGGAACAGGGGAGAACTCCTGAGCTTCCTGATTGAAATCACTGCAGATATATTTGGAATTAAGGATGATAAAGGAGATGGATATCTGGTTGACAAGGTTCTCGACAAAACCGGCATGAAAGGAACCGGTAAGTGGACTGTCCAGCAAGCTGCTGAGTTATCAGTTGCTACACCCACGATTGAGGCTTCTTTGGATGCTAGGTTCCTTAGTGGATTGAAGGAGGAAAGAGTTGAAGCTGCAAAGGTGTTCAAATCCGGTGGTTTTGGCGATATCTTGAGTGATCAACCAGTAGACAAGCAGAAGCTGATTGATGATGTTAGGAAGGCTCTTTATGCTGCAAAAATCTGTAGTTATGCACAGGGAATGAATCTGATCCGTGCCAAGAGTATCGAAAAGGGTTGGGATTTGAAGTTGGGTGAACTTGCCAGGATCTGGAAAGGTGGTTGCATCATAAGAGCCATATTCTTGGACAGAATAAAAAAGGCATACGACAGGAATGCTAACCTCGCTAACCTCCTCGTGGATCCGGAGTTTGCGAAGGAGATCATCGATCGCCAATCGGCCTGGCGCAGAGTCGTGTGTCTTGCTATCAACTCGGGCATCAGCACGCCCGGTATGTCTGCTAGTCTTGCTTATTTTGACTCCTACAGAAGAGAGAGATTGCCTGCTAATTTAGTGCAAGCTCAGAGGGACTATTTTGGTGCACATACATACGAAAGGACTGACATTGAGGGATCTTTCCATACCGAGTGGTTCAAGCTTGCTAAACAGTCAAGAAGCTAG 1461 0.4648 MAPPKTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPVYGYHDPESFVQSIQKPRVIIMLVKAGAPVDQTIKTLSGYLEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQNVFAEWNRGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSVATPTIEASLDARFLSGLKEERVEAAKVFKSGGFGDILSDQPVDKQKLIDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNANLANLLVDPEFAKEIIDRQSAWRRVVCLAINSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDIEGSFHTEWFKLAKQSRS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2932 486 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 4 485 IPR006183 GO:0004616
Amo10g2932 486 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 184 477 IPR006114 GO:0004616|GO:0006098
Amo10g2932 486 PRINTS 6-phosphogluconate dehydrogenase signature 6 29 IPR006183 GO:0004616
Amo10g2932 486 PRINTS 6-phosphogluconate dehydrogenase signature 71 100 IPR006183 GO:0004616
Amo10g2932 486 PRINTS 6-phosphogluconate dehydrogenase signature 124 149 IPR006183 GO:0004616
Amo10g2932 486 PRINTS 6-phosphogluconate dehydrogenase signature 173 201 IPR006183 GO:0004616
Amo10g2932 486 PRINTS 6-phosphogluconate dehydrogenase signature 255 282 IPR006183 GO:0004616
Amo10g2932 486 PRINTS 6-phosphogluconate dehydrogenase signature 367 389 IPR006183 GO:0004616
Amo10g2932 486 TIGRFAM gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 8 478 IPR006113 GO:0004616|GO:0006098
Amo10g2932 486 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 7 177 IPR006115 GO:0050661
Amo10g2932 486 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 180 IPR036291 -
Amo10g2932 486 Gene3D - 447 479 - -
Amo10g2932 486 SMART 6PGD_2 184 478 IPR006114 GO:0004616|GO:0006098
Amo10g2932 486 Gene3D - 186 444 IPR013328 GO:0016491
Amo10g2932 486 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING 4 485 - -
Amo10g2932 486 PIRSF 6PGD 1 486 IPR006113 GO:0004616|GO:0006098
Amo10g2932 486 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 182 479 IPR008927 -
Amo10g2932 486 Gene3D - 4 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2932 Amo-Chr10 94661857 94664689 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2932 K00033 - gmx:100796103 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2932 10 94661857 94664689 Amo14g3882 14 144304394 144311589 PCT
Amo14g3882 14 144304394 144311589 Amo10g2932 10 94661857 94664689 PCT