Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2925 ATGATGAGGGAAGGAACAAACATCAATATTGGCGGGAGTTGCAGCTCCACCAACAACTGGTCACGTGCCTGCGACACGTGCCGCTCTGCACCCTGCGTGGTGTACTGCCGCGCGGACTCTGCCTATCTCTGCTCCGCATGTGACGACAGAGTCCACGCGGCAAACAGGGTGGCGTCGAGGCACGAGCGCGTGTGGGTCTGCGAGGCCTGCGAGCGTGCTCCGGCAGCCTTCCTCTGCAAAGCCGACGCCGCCTCTCTCTGCTCCTCCTGCGACTCCGACATCCACTCCGCCAACCCCCTTGCCGGCCGCCACCACCGCGTCCCCATTCTCCCCATCTCAGGCTGCTCCTCGCTCATCCGAGAAGGAGAACAAAAAGAAGGAGAACCAGAAAGAGAAAATGATCACGTGTTTGAAATTGAAGGTACAATTAATAATCAGAATTATAACCATGGATGTGAAATGGAGGATGAGGAGTGTGAGGGTGATGATGAGGCTGAAGCTGCTTCGTGGTTGTTGCCGCATCCTGTGAGGATGGGTGGTAACGATGAGAGTGATGGGTTCTTGTTTTGTGGTGGCGACGGTGACGGCGATGGTGATGATTGTCTTGATCATGATCAAGATCAAGATATGCTGCATAACTATGGCGGCGATCATAATCAGGGAAACAACCATGACAGCGTGGTTCCGGTTCAGATGCAACAGTGTTTCGAGTTTGACTCCTCTAAAGTTGGTGCTGGATTCAGTTACAATGGTTCTCTTAGTCAAAGTGTTTCAATGTCATCCATGGAAGTTGGAGTTGTACCAGAATCAACGTTGAGTGATGTGTCAATCTCACATTCAAAGCCACAAATAGGAACAAGTGAGCAATTTCCTCCAATGCCTATGCCTTCATCACTTCTAACTCCAATGGACAGAGTAGCCAGAGTTCTAAGATACAAAGAGAAAAAGAAAACAAGAAAGTTTGAGAAGAAAATAAGATATGAATCAAGAAAGGCCTATGCAGAAACCAGGCCACGTATTAAGGGTCGTTTTGCAAAGAGAACAGATGTAGAAGCTGAAGTTGATCAAATGTTATCATCAACCCTAATGTCAGAAGCTGGATATGGCATTGTTCCTTCCTTCTGA 1125 0.4907 MMREGTNINIGGSCSSTNNWSRACDTCRSAPCVVYCRADSAYLCSACDDRVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDSDIHSANPLAGRHHRVPILPISGCSSLIREGEQKEGEPERENDHVFEIEGTINNQNYNHGCEMEDEECEGDDEAEAASWLLPHPVRMGGNDESDGFLFCGGDGDGDGDDCLDHDQDQDMLHNYGGDHNQGNNHDSVVPVQMQQCFEFDSSKVGAGFSYNGSLSQSVSMSSMEVGVVPESTLSDVSISHSKPQIGTSEQFPPMPMPSSLLTPMDRVARVLRYKEKKKTRKFEKKIRYESRKAYAETRPRIKGRFAKRTDVEAEVDQMLSSTLMSEAGYGIVPSF* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2925 374 MobiDBLite consensus disorder prediction 277 294 - -
Amo10g2925 374 ProSiteProfiles CCT domain profile. 305 347 IPR010402 GO:0005515
Amo10g2925 374 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
Amo10g2925 374 CDD Bbox1_BBX-like 23 66 - -
Amo10g2925 374 Pfam CCT motif 305 347 IPR010402 GO:0005515
Amo10g2925 374 SMART bboxneu5 19 66 IPR000315 GO:0008270
Amo10g2925 374 SMART bboxneu5 67 109 IPR000315 GO:0008270
Amo10g2925 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 374 IPR045281 GO:0009909
Amo10g2925 374 MobiDBLite consensus disorder prediction 277 300 - -
Amo10g2925 374 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Amo10g2925 374 CDD Bbox1_BBX-like 66 109 - -
Amo10g2925 374 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Amo10g2925 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 18 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2925 Amo-Chr10 94587987 94590932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2925 1 374 C2C2-CO-like Transcription Factor Family AT3G02380 48.379 1.16e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo10g2925 zf-B_box 1.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3520 20 145442610 145445070 Amo10g2925 10 94587987 94590932 hybridization
Amo10g2925 10 94587987 94590932 Amo14g3890 14 144392883 144395571 PCT
Amo14g3890 14 144392883 144395571 Amo10g2925 10 94587987 94590932 PCT