Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2913 ATGGACCATAACAACTCTGACCTGTTCCAACTGCTTGGTGCCGGTGGTGGTGGTGGGTATTACCCGGCTGCTGCCATGTTGATGATGGATCATCATCAGCATCAGGTGTCCTCTGATGATAACATGAGCGCCATAGAGACAGAAGCCTCTCATCATCATCAACAACAAGATAGAGCACTCGCTGCCCTCAGAAACCACAAGGAAGCTGAGAAGAGACGCAGGGAGAGAATCAATTCTCACCTTGCTCGTCTTCGCACTCTTCTCCCTTGCAACTCCAAGACAGATAAAGCATCGCTTCTTGCAAAGGTGGTGCAGAGAGTGAAAGAGTTAAAACAGCAAACATCAGAAATAATCACCGAATTCGAAACCCTACCCTCCGAAACAGACGAGATCAGCGTCCTGTCCACCGCAGACGGCGGCCACGGAGGGCTGATATTCAAGGCCTCCCTGTGCTGCGAGGACCGCTCCGATCTCATCCCGGAGCTCATAGAGATTCTCAAATCTCTGCACCTGAAGACGCTGAGGGCAGAAATGGCAACCCTAGGCGGAAGAACCCGCAACGTTCTGGTGGTTGCCGCCGACAAAGAACACAACAGCATAGAGTCCATTCATTTTCTTCAGAACTCGTTGAGGTCCTTGCTTGAACGCTCTGGTTCCGCCGATCGCTCCAAACGACGCCGTGCCATGGATCGAAGATTCACGCCTGCTTCATCATGA 717 0.5188 MDHNNSDLFQLLGAGGGGGYYPAAAMLMMDHHQHQVSSDDNMSAIETEASHHHQQQDRALAALRNHKEAEKRRRERINSHLARLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEIITEFETLPSETDEISVLSTADGGHGGLIFKASLCCEDRSDLIPELIEILKSLHLKTLRAEMATLGGRTRNVLVVAADKEHNSIESIHFLQNSLRSLLERSGSADRSKRRRAMDRRFTPASS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2913 238 MobiDBLite consensus disorder prediction 217 232 - -
Amo10g2913 238 Pfam Helix-loop-helix DNA-binding domain 65 110 IPR011598 GO:0046983
Amo10g2913 238 MobiDBLite consensus disorder prediction 217 238 - -
Amo10g2913 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 132 IPR036638 GO:0046983
Amo10g2913 238 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 38 232 - -
Amo10g2913 238 Gene3D - 54 119 IPR036638 GO:0046983
Amo10g2913 238 SMART finulus 67 116 IPR011598 GO:0046983
Amo10g2913 238 CDD bHLH_AtAIG1_like 56 133 - -
Amo10g2913 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 110 IPR011598 GO:0046983
Amo10g2913 238 PANTHER TRANSCRIPTION FACTOR BHLH30 38 232 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2913 Amo-Chr10 94439023 94440662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2913 16 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 64.878 7.11e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo10g2913 HLH 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2913 - K22484 gmx:100802566 286.189