Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2904 ATGATGATGCACCGCAATTCCAAGAGGAGGTGGGCTGTCACCGCCACACCCATCAAGGATGGCTACGTGGACGCATTTGCATTCATGAGTTTCCTGGATTTTGAACCATTCTCCAATAGAGAAAGTTGGAACCGGTTCATTCAGCGTCCCATAAATCAAGGCCTCAACATCGGCCACGAGCGCCTTGAGGTGTTTTGGGTTTTTGTTTCTTGTATAAGTGGTTTCAGTCTTTACGATTGTTTTACCAACTTGTTTCATCGGGTATTGATGAAGGCAATTTTGTTAAGAAAAACAAAAGACAATGAATTGTTAGGGATGCTACCAAAAACTATTGAGACTCTATGCTGA 348 0.4282 MMMHRNSKRRWAVTATPIKDGYVDAFAFMSFLDFEPFSNRESWNRFIQRPINQGLNIGHERLEVFWVFVSCISGFSLYDCFTNLFHRVLMKAILLRKTKDNELLGMLPKTIETLC* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2904 115 Pfam SNF2-related domain 3 112 IPR000330 GO:0005524|GO:0140658
Amo10g2904 115 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 59 IPR027417 -
Amo10g2904 115 Gene3D - 1 70 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2904 Amo-Chr10 94362198 94362895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2904 7 113 RAD5 or RAD16-like Gene Family AT5G05130 41.121 5.05e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo10g2904 SNF2_N 1.7e-11 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2904 K15711 - aip:107622939 130.568