Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2902 ATGAGTATCATGAAGTCATTGGATCACTGGAGGAGTTACTTCAGGTCTTGTTCATCTTCATCTGATATATTTGAAATAATTGACCATGCGATCATGGTGGCTGCTTCTGATTGTCCCAAGGAGTTCAAGTTGAGAAGGGACCATATTGCTGAGATGCTCTTCTCTTGCAAGCAAACAAGGTGCGTGGGTTGTGACAGGGTTGAGCTCTCTGTCCCTATTGATGGTGCTGATGGTGGTGGTGCTCGTGGTGGTGGTGATGATGATGATGGTGCCTACAAGAGCAGTGGTTTTCATCACAATCGGGATGGTGTTGTTGAGTTTGAAGCTGGAGCAAGCAAGGAGAGCAAGGTGAATAGCTCAAGGGGTGATATTGATGATCATGGTGACATGGATGTGAATAGGGTCCTTAGCAATTATAGCTTTGGTGAAGCTGAGGCATTGACGGATGAAATGGAAGAACAGTCTCAGTTTGTTGCTGAGGTCTTGAGGATCAGAGACATTCTCCATAACCGTCAGGAAGAGTCAGATGGAGTATTGTTTGACTCACTGAGGAGGCTGCAACTGATGGAACTCACTTTTGATTGTCTCAAGGCAACTGAGATTGGAAAGGCTGTTAATCCTCTTAGAAAGCATGCTTCAAAGGATATCCGTCAACTCGCACGAAAGCTTATTGATGATTGGAAAGAAATGGTAGATGAGTGGGTCAAGGCCACAGCTATTGCAGGATCAGAAGGCACTCCAGATTCTGTAAATCCATCAGTTGTTGATGAAGAGGAAGGACTTCCATCACCTCCTTTGGACGAAGGCGCTTACTTGGTAGCTTCAACCGGTTCAATTGAACTCTCTCAGTTCTTTGATGGCATGGATGATATCGGAAGATTTTTTTCAGATCCTCTACAAAGTGGGCAAGTCAGGAACCGAGAAAATGGCAGAAAGCCATCAATGGACATCCAAAATATGGAAAAGAGGAAACCACAGGCTTCAAATGACACTGCCAAGGATAGTAAGAGCCAGCTGGTTAAGAAAAATGAGCCCACAGTGAAGCCAAGTAGACCGGTAGCCGCTGATTCTGGTCCTGGCAGACCACCAAAGTCAAGCATGCAGCGAAAAAGCAATGTCGAGCCAAGAACAGAGAATGGTACAGTCACAAGGAAGCCTCCGGTTGACCAGCAAGATAAATCGAATTGCTCGGACGATGTGGATGCGAAGCTAGAAGCCACTAAGAGGAAACTTCAGGTTCGATATCAAGAAGCCGAAAAAGCTAAGAGGCAACGAACTATACAAGTAATGGAATTGAATGATCTCCCAAAGCAAGGAGCCGGCCAGCGAAATCCTCAGTTCAAAGCCGGAAACCATAACCGGCACTGGGCCAACGGTCGAAGGTAG 1386 0.4603 MSIMKSLDHWRSYFRSCSSSSDIFEIIDHAIMVAASDCPKEFKLRRDHIAEMLFSCKQTRCVGCDRVELSVPIDGADGGGARGGGDDDDGAYKSSGFHHNRDGVVEFEAGASKESKVNSSRGDIDDHGDMDVNRVLSNYSFGEAEALTDEMEEQSQFVAEVLRIRDILHNRQEESDGVLFDSLRRLQLMELTFDCLKATEIGKAVNPLRKHASKDIRQLARKLIDDWKEMVDEWVKATAIAGSEGTPDSVNPSVVDEEEGLPSPPLDEGAYLVASTGSIELSQFFDGMDDIGRFFSDPLQSGQVRNRENGRKPSMDIQNMEKRKPQASNDTAKDSKSQLVKKNEPTVKPSRPVAADSGPGRPPKSSMQRKSNVEPRTENGTVTRKPPVDQQDKSNCSDDVDAKLEATKRKLQVRYQEAEKAKRQRTIQVMELNDLPKQGAGQRNPQFKAGNHNRHWANGRR* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2902 461 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 156 238 IPR035441 -
Amo10g2902 461 ProSiteProfiles TFIIS N-terminal domain profile. 159 234 IPR017923 -
Amo10g2902 461 Pfam TFIIS helical bundle-like domain 183 231 IPR017923 -
Amo10g2902 461 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 460 IPR044805 -
Amo10g2902 461 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 460 - -
Amo10g2902 461 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 149 243 IPR035441 -
Amo10g2902 461 MobiDBLite consensus disorder prediction 242 268 - -
Amo10g2902 461 MobiDBLite consensus disorder prediction 433 461 - -
Amo10g2902 461 MobiDBLite consensus disorder prediction 364 390 - -
Amo10g2902 461 MobiDBLite consensus disorder prediction 296 401 - -
Amo10g2902 461 SMART TFS2_5 158 233 IPR003617 GO:0005634
Amo10g2902 461 Coils Coil 401 424 - -
Amo10g2902 461 CDD TFIIS_I 159 232 - -
Amo10g2902 461 MobiDBLite consensus disorder prediction 326 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2902 Amo-Chr10 94318869 94322649 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo10g2902 Med26 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2902 - - gmx:100775579 560.451