Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2898 ATGCCTTCTTCGAATTCGAATAAGAAGAAGCATTCCAAGTCAAAGCACGAAGCTGCTTCTTCTGCACCACCGGTTACTCCTCCTCGAACGCCGTCACGCCCCGACGACGAGGCCGACCTCGCCGCTTCTCTCTGCCTTCCAGAAGCTTCTCGAAGGTACCCTTCCTTCATCGGAGCATCTGCCGTTGTCGCCCAAGTCTCCGCCGTTGATAATGCGCCTAATTCCACGGACTCAAGAATCTGGCTCTCCGAACTTGCCATGGTTTCCTCTTCTCTTGCCCCTGGTACTCTTGTCTCGGTGTCAATTGCTTCATCAATGAACAGAAGTGTGCAATTGAATCCTCTCAAGTCATTAGTTGATGAATGTGTTAGATGCTACGGCTTGGAAACTGGGAAGACGTTGAAAGATGATGTCACAGGGAATTACTTTGTGCTTGCAACTGTTTTCCCTTCTACGAAGGTTTTGAAGAATGGAGTACGTCTGTCCTCAAATATTTCTTGTACAATGGGATGTCCTCCTTTGGGTACAATAGTGTTTGTTTACCCAGTACAGAAACAGTACTTATCTGGTCTTGCAAATGGGAGCAATGAACTGCATTATACAGAAAGTAATTGTCTCTCGATATATAATTGCAAGGAATTGTATCTACAGCTTGCTCCTCATAAGGATGGATTTCAATTGGACATTAATAACTCAGCCTCTGTGACGAAATCCCAAGTCCAGTCAGACAGTGATATTTTTGCATCTCCTAGCACACCTTCTAATGGATCAAAGTTTTCTAATGCTAGTGTGTTGTCTTCTCCAAGATTTGAAGATTCAGCATCAACTATACCCATTCAGAATAATCAATCTATGGCTTCATTCAATATTATGGATGCATTAGGAGATGAAAGTTCGAAAAAATTACTACAGGCATGTGCAACTTCATGGTTATATTCTCGTTATTTACTGCTAGGTAATTTTGTCTCTGTACCAATGTTTTCAGAGGTGTGCATTTTCCAAGTGATAGGAGCCAAAAAGGCACCAGTTGATAGAGCTGATAATTATTCATCAAATGGGATCAATAATTTGTGTCTTGAGGATTCTGATGTAGCAGAAAATGTGAATGAGGCAATAGTTGTCAATTGTGAAACAAAGGTATTTTTATCTTTGCAATCAAATGCAGCATCTAAAGAGTCAATTCAAAGGGATTTGCCCAGTGAAAAACGTAAAGCAGAGGTTGCTAATCCTAGCATATATGATAATATTTCTAAACTGGGTGGTCTATCTAAAGAATATACAGTTTTAAAGGATATAATTTCTTCATCAGTAAAGGATGCTTTATCAAGTTTTGGTTTACGTATCACAAGAGGAGTCCTTCTACATGGTCCACCTGGTACAGGGAAGACTTCCCTTGCTCAATTATGTGCTCATGATGTTGGGGTAAATTTTTTCCAAATAAATGGACCTGAAATTGTTACCCAGTATTTTGGGGAAAGTGAGCAAGCATTGCATGAAGTTTTTGATTCAGCAATTCAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGAAAAGATGGAGGTGAAGAGCTATCTCAAAGAATGGTCGCAACATTATTGAATTTGATGGATGGAATTAGTAGAACCGAAGGGTTGCTTGTAATTGCTGCCACCAACAGGCCTGATCATATTGAGCCAGCTCTCCGACGACCTGGAAGATTTGACAAAGAAATCGAAATTGGTGTGCCGTCCCCAAAACAACGCTTGGATATTTTGTTCACTCTTCTTTGTGGAGTGGATCATTCTCTCTCAGATTTACAAGTTGAACACCTTGCCACTGTCACTCATGGTTTTGTGGGCGCTGATCTGGCCGCCCTTTGCAATGAGGCGGCGCTGATTTGTCTAAGACGTTATGCTAATTTAAAGAAGAGTTGTGGTGATTTTTCCAATGATATAACAGAGCAACCCACATTGATGAATGGCGAAACAAACTCCAGAAATCAATCAGGTATTGCAACTTCATCTGTTTCAGAATCTGATACATCAGTGGCCTCCAATGCTGTATTACAGCTCTGCATGATGGACACAACTTCGGAATCTATGGAAATAATTTCTGATAGTGATAAAGACCACAATTTGAAAGTCAGTTTTGAAGATTTTCAGAAGGCTAGAATGAAAATAAGACCCAGTGCCATGCGAGAGGTAATCCTTGAGGTTCCAAAGGTCAATTGGGAAGATGTAGGTGGTCAAAATGAAGTCAAAGCTCAGTTAATGGAAGCTGTAGAGTGGCCCCAGAAGCACCGTGATGCGTTCAACCGTATTGGGACTCGCCCTCCTACAGGTGTATTGATGTTTGGGCCTCCAGGTTGTAGCAAAACCCTCATGGCACGAGCAGTTGCATCTGAAGCTGGGCTGAACTTCCTAGCTGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCAGAGAAGGCTGTCAGATCATTGTTTGCAAAAGCAAGGACCAATGCCCCATCCATTGTATTTTTTGATGAAATTGATAGTCTTGCTGTAACCCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAATTGGATGGTCTGCATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGATAAGATTGATCCTGCCCTTTTAAGACCAGGACGCTTTGATCGCCTGCTTTATGTTGGACCTCCAAATGAGACAGACAGAGAAGATATATTTCGCATTCATTTGCGTAAAATTCCATGTGATTCTGATGTAAGCATTAAAGAACTTGCTCACCTCACAGATGGTTGTACTGGGGCTGACATATCACTAATATGTCGAGAGGCAGCCGTTGCAGCGATTGAGGAGAACCTTGGTGCTTCAGTTATATCAATGAAGCATTTAAAGAAGGCAATCAATCAGGTCCAGCCATCTGAAGTACAGTCCTACCAGAAGCTGTCAGCAAAGTTTCAAAGGGCTGTTCGCAGCTGTGATACAAATGAACTTGATCATATGCCGCACAAAAGTGGATATACTTCGTTCAACGTTCGGAATGTCTTAAAATCTTGCGCATTGCTCCTTCCTATTCCAGCAGTCATTCTTTATTTTTGGACAGCCCGAAGTGGTTAA 3165 0.4202 MPSSNSNKKKHSKSKHEAASSAPPVTPPRTPSRPDDEADLAASLCLPEASRRYPSFIGASAVVAQVSAVDNAPNSTDSRIWLSELAMVSSSLAPGTLVSVSIASSMNRSVQLNPLKSLVDECVRCYGLETGKTLKDDVTGNYFVLATVFPSTKVLKNGVRLSSNISCTMGCPPLGTIVFVYPVQKQYLSGLANGSNELHYTESNCLSIYNCKELYLQLAPHKDGFQLDINNSASVTKSQVQSDSDIFASPSTPSNGSKFSNASVLSSPRFEDSASTIPIQNNQSMASFNIMDALGDESSKKLLQACATSWLYSRYLLLGNFVSVPMFSEVCIFQVIGAKKAPVDRADNYSSNGINNLCLEDSDVAENVNEAIVVNCETKVFLSLQSNAASKESIQRDLPSEKRKAEVANPSIYDNISKLGGLSKEYTVLKDIISSSVKDALSSFGLRITRGVLLHGPPGTGKTSLAQLCAHDVGVNFFQINGPEIVTQYFGESEQALHEVFDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRLDILFTLLCGVDHSLSDLQVEHLATVTHGFVGADLAALCNEAALICLRRYANLKKSCGDFSNDITEQPTLMNGETNSRNQSGIATSSVSESDTSVASNAVLQLCMMDTTSESMEIISDSDKDHNLKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQNEVKAQLMEAVEWPQKHRDAFNRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARTNAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREDIFRIHLRKIPCDSDVSIKELAHLTDGCTGADISLICREAAVAAIEENLGASVISMKHLKKAINQVQPSEVQSYQKLSAKFQRAVRSCDTNELDHMPHKSGYTSFNVRNVLKSCALLLPIPAVILYFWTARSG* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2898 1054 Pfam ATPase family associated with various cellular activities (AAA) 782 913 IPR003959 GO:0005524|GO:0016887
Amo10g2898 1054 Pfam ATPase family associated with various cellular activities (AAA) 452 581 IPR003959 GO:0005524|GO:0016887
Amo10g2898 1054 Gene3D - 583 742 - -
Amo10g2898 1054 ProSitePatterns AAA-protein family signature. 884 902 IPR003960 GO:0005524|GO:0016887
Amo10g2898 1054 MobiDBLite consensus disorder prediction 1 38 - -
Amo10g2898 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 639 IPR027417 -
Amo10g2898 1054 ProSiteProfiles EF-hand calcium-binding domain profile. 695 730 IPR002048 GO:0005509
Amo10g2898 1054 MobiDBLite consensus disorder prediction 656 677 - -
Amo10g2898 1054 PANTHER - 74 1012 - -
Amo10g2898 1054 Gene3D - 915 1003 - -
Amo10g2898 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 740 992 IPR027417 -
Amo10g2898 1054 Pfam AAA+ lid domain 936 982 IPR041569 -
Amo10g2898 1054 Pfam AAA+ lid domain 605 639 IPR041569 -
Amo10g2898 1054 CDD AAA 450 581 - -
Amo10g2898 1054 Gene3D - 743 1014 IPR027417 -
Amo10g2898 1054 Gene3D - 397 581 IPR027417 -
Amo10g2898 1054 PANTHER AAA-FAMILY ATPASE 74 1012 - -
Amo10g2898 1054 CDD AAA 748 914 - -
Amo10g2898 1054 SMART AAA_5 778 916 IPR003593 -
Amo10g2898 1054 SMART AAA_5 448 584 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2898 Amo-Chr10 94240050 94247578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2898 1 1039 Calmodulin-binding Proteins AT3G56690 56.221 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2898 - - gmx:100788600 1415.98