Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2897 ATGAGGGAAGAAGATTCAAACTGGTTTGCCAGATGGGAAGACGAACTACCTCCGCCGGAGGAACTCATGCCCTTATCGCAAACCCTAATCACACCCGATCTTGCCATCGCCTTCGACATCCCCAGTCCTCACACCCCAACCGCCGCCGCCACCGCCACCCCAACCACCCCGAACCACCACCTCCACCACCACCAACAACCACAGCAACCGCAACCACCTTCAAACCCTTCCCCCTCGCATCAGCAACAACCCTCCTCCGGCGGCGACTTCGCCGACTCCGGCGATCTTGGCTCCGGCGCCGCCGGTGAGGAGCCAGCCAGAACCCTCAAGAGGCCCCGCCTCGTTTGGACCCCACAGCTCCACAAGCGCTTCGTCGACGCCGTCGCACACCTCGGAATCAAGAACGCGGTTCCGAAGACCATAATGCAGCTCATGAGCGTTGACGGCTTAACCCGCGAGAACGTCGCCAGCCACCTCCAGAAGTACCGCCTCTACCTCAAGCGCATGCAGGGACTCTCCGCCGCCGGACCCGGCGGCGGCGGAGCGGGTGGCGGTGGATCCGATGCCGCCACTGATCACCTCTTCGCCAGCTCCCCTGTGCCGGCGCATTTCCTCCACCCGGCTGCCGCGGCCGCGGGCGGGAGGCCTAATTCAGAGCATTTCCTGCCGTTCGTGTCGGTACCGGCAATGCACCACCAGCAACACCACCACCAGATGGCTGCTGCAGCTGCCGGTGCTGCAGCGATGCAGCACGTCCAGCTGCAGCAGCAGTTCCATAGGCAGGCATCCGGGCATTTTGGGTCGCCGCCGAACGGGCACTTTGAGCATGCTTTCATGTCAAGGCAGCAGCCGCCGCCGCAGAATCAGCAGCAGCAGTTCAATAGAATGGGTGGAGGTGTGGCTGGATATGCAGAGGATATGGAATCTGCTAATGCATCTGGTGCAAGGAAGGTTCTTACTCTTTTTCCAACTGGAGATGATTGA 984 0.6159 MREEDSNWFARWEDELPPPEELMPLSQTLITPDLAIAFDIPSPHTPTAAATATPTTPNHHLHHHQQPQQPQPPSNPSPSHQQQPSSGGDFADSGDLGSGAAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSAAGPGGGGAGGGGSDAATDHLFASSPVPAHFLHPAAAAAGGRPNSEHFLPFVSVPAMHHQQHHHQMAAAAAGAAAMQHVQLQQQFHRQASGHFGSPPNGHFEHAFMSRQQPPPQNQQQQFNRMGGGVAGYAEDMESANASGARKVLTLFPTGDD* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2897 327 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 248 IPR044841 GO:0003700|GO:0006355
Amo10g2897 327 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 249 327 IPR044841 GO:0003700|GO:0006355
Amo10g2897 327 MobiDBLite consensus disorder prediction 46 68 - -
Amo10g2897 327 MobiDBLite consensus disorder prediction 1 18 - -
Amo10g2897 327 MobiDBLite consensus disorder prediction 1 24 - -
Amo10g2897 327 MobiDBLite consensus disorder prediction 36 110 - -
Amo10g2897 327 Pfam Myb-like DNA-binding domain 115 163 IPR001005 -
Amo10g2897 327 MobiDBLite consensus disorder prediction 281 296 - -
Amo10g2897 327 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 112 164 IPR006447 GO:0003677
Amo10g2897 327 SUPERFAMILY Homeodomain-like 108 168 IPR009057 -
Amo10g2897 327 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 248 - -
Amo10g2897 327 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 249 327 - -
Amo10g2897 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 167 IPR017930 -
Amo10g2897 327 MobiDBLite consensus disorder prediction 273 297 - -
Amo10g2897 327 Gene3D - 108 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2897 Amo-Chr10 94226676 94229053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2897 1 327 G2-like Transcription Factor Family AT3G10760 54.318 2.91e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo10g2897 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2897 - - aip:107623693 447.588