Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2879 ATGGATGCACAAGCTAAGAAAAAGGCAGATTTTCGTGCTAAATTGGCCCAGAAGAAAGAAAAGCGTATAGATTCTCCCCTTGTAAGGTATAATGAATTCAATCAACCTGTTTGTCGGGTTTGTGATGTTGTTCTGAAGTCTGAATCTATATGGGATGCACACCAAATCTCCCGTAAGCATCGCGAGGCGATTGATAATCTTAAAGCTAATGCAGTTGGGTTAACTCAGCAAAACAATGCAAAGTCTGCTGCTGGTAACAGATTTCCCAAAGCCAAACCTGAACAACCTTCCGAACCACTATCCAAAAAGCCTGAACCTTCACAAGAAGTATCTAAAGCCCAGTCATCGTCTGTGCTTCCACCAAATTTTTTTGATGACAGTGCAAGGAAAACCAGAAGAAATGTGGGAGTTTCTGCTCAAAGTCAGGTGTCAAAGTTGGAGGAAAGAGATCATTTTCGTGGTCATGATGCTGCGCCGTCAAAGTTTAGTCAAGCAACAACAGAGACTAGGCAGACCTCAGCCAAAACTTCTGATCCAGAGGACAACCAAACAAAAGGATCTCTGCCTGAAGGCTTTTTTGACAATAAGGAAGCGGATTTGCGGGCACGTGGCATTAAGCCTGTGAAGCCAGATGTCAAGGATGAGTACAAGGAGTTTGAGAAGCTGATTCAAGAGGACTTGAAGGAGGTGGATGACCGATTGGAAGAAGAAGAGATTGATGCTGCTGAAATGATAGAAGAAGCTGAATCCGTTGAACAAAAGATCTTCAGGGAGAGAGTGGAAATGTTGAAGAAAAAGAGACTGGAGCTGAAAGCAGCAAAGTCRGCAAAGCGAGGTAAAACTTGTGAGGGTGAAACCAAGGAGGAGTCAAGGCATGAAGAAGAGTCATCCAGTGATGATGAAAGTGGTGAGAATTTTGCTGTGGACTGGAGAGCACAACACTTGTGA 948 0.4367 MDAQAKKKADFRAKLAQKKEKRIDSPLVRYNEFNQPVCRVCDVVLKSESIWDAHQISRKHREAIDNLKANAVGLTQQNNAKSAAGNRFPKAKPEQPSEPLSKKPEPSQEVSKAQSSSVLPPNFFDDSARKTRRNVGVSAQSQVSKLEERDHFRGHDAAPSKFSQATTETRQTSAKTSDPEDNQTKGSLPEGFFDNKEADLRARGIKPVKPDVKDEYKEFEKLIQEDLKEVDDRLEEEEIDAAEMIEEAESVEQKIFRERVEMLKKKRLELKAAKSAKRGKTCEGETKEESRHEEESSSDDESGENFAVDWRAQHL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2879 315 Coils Coil 57 77 - -
Amo10g2879 315 Pfam Zinc-finger of C2H2 type 38 60 - -
Amo10g2879 315 Coils Coil 220 254 - -
Amo10g2879 315 Coils Coil 1 21 - -
Amo10g2879 315 MobiDBLite consensus disorder prediction 76 199 - -
Amo10g2879 315 MobiDBLite consensus disorder prediction 272 315 - -
Amo10g2879 315 PANTHER UNCHARACTERIZED 1 315 IPR040050 GO:0003676|GO:0005681|GO:0008270
Amo10g2879 315 MobiDBLite consensus disorder prediction 272 298 - -
Amo10g2879 315 SUPERFAMILY beta-beta-alpha zinc fingers 30 71 IPR036236 -
Amo10g2879 315 Gene3D Classic Zinc Finger 31 69 - -
Amo10g2879 315 MobiDBLite consensus disorder prediction 160 184 - -
Amo10g2879 315 MobiDBLite consensus disorder prediction 101 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2879 Amo-Chr10 94028004 94031987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2879 1 315 C2H2 Transcription Factor Family AT3G02860 52.853 1.54e-94 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2879 K13104 - gmx:100808515 400.593