Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2872 ATGTCTTCATCTTCTCCTGTTCTTCCAACACCACTGGATAACAAGTACATGAAACCCCCAGATTCGTTTCAGCTTTCGCCTATAAGAGAAATGACTGTGAATCCATCCCCCTTACAATCTACATCGTCGAATTCCAACACCAGAAGTACCGGACACACATTTTCGTCCCCTGGTGTTGTCTCTTTTTCTTCAGCTTCGCAGCATGAAAGGCAGCATCAACCTTCTTCCTTTGTTTCACAGACATTAGGTGAAGACAGTGTGTCTTCGGAGCTACATTCAGCATCATTCATTTCCCAGCCTCAAGAAAGCGACGAGATTTCCTGGGGACCGGATCCGTTCCAGGATATGCTTGGTTTCCCTGAAAATGTTTCTGTCCAGCATGATCAGGTGGAAAATGGTGCTTGTTATACAAACGATGACAATGTCAAACAATCTGATTTTGGGGAGTGGGTTGATAAGTTAATGTCAATTGATGATTCTTATGACCCAAATTGGAGTCAGCTCCTTGGTGATGATAATGAATCAGAACCAAAACCAAAGCCCATCCAGCAGCAGAATGTACCATCTAAAGAAGTTAAAGGTCTTCCTAGTTCTCCATCAACTGCATCACAAACGAAGCCTCGAATGCGTTGGACACCAGAACTTCACGAGGCCTTTGTGGAAGCGGTGAATCAGCTTGGTGGCAGCGAGAAGGCTACTCCCAAGGGGGTCTTGAACCTCATGAAAGTTAAGGGCCTTACGATCTACCATGTCAAAAGCCACCTACAGAAGTATAGAACGGCCAGGTACAAACCTGAGACCCCAGAAGGAACTTCTGAGAAAAAGCTAAGTTCAATTGAAGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGGATTACCGAGGCATTGCGGTTGCAAATGGAACTCCAGAAGCGGCTTCACGAGCAACTTGAGATCCAAAGGAAGTTGCAGATTCAAATAGAAAACCAAGGGAAGCGCCTCCAGATGATGTTCGAGCAGCAGAGAGAGATGGGAGATAGCAAGTTTAAGGACTCCTCCTCTTCCTCCTTGGACGAGCCTTCCAATTCAGAAGCTCCAAAAGAGCAAAATGAGAAATTAGGAAGTGGAAGTTGCATAACGAAAGCCGGGCCAGGAGAAAGCTCTTGGGACGAAAGCACGAAGCAGGAAATGGCAGATGAAGCTCAAGTTAGTGTCCCACCACCCACAAAACGGGTCAAGACTTAA 1227 0.4564 MSSSSPVLPTPLDNKYMKPPDSFQLSPIREMTVNPSPLQSTSSNSNTRSTGHTFSSPGVVSFSSASQHERQHQPSSFVSQTLGEDSVSSELHSASFISQPQESDEISWGPDPFQDMLGFPENVSVQHDQVENGACYTNDDNVKQSDFGEWVDKLMSIDDSYDPNWSQLLGDDNESEPKPKPIQQQNVPSKEVKGLPSSPSTASQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVKGLTIYHVKSHLQKYRTARYKPETPEGTSEKKLSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKRLQMMFEQQREMGDSKFKDSSSSSLDEPSNSEAPKEQNEKLGSGSCITKAGPGESSWDESTKQEMADEAQVSVPPPTKRVKT* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2872 408 Gene3D - 205 264 - -
Amo10g2872 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Amo10g2872 408 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 260 IPR006447 GO:0003677
Amo10g2872 408 MobiDBLite consensus disorder prediction 336 408 - -
Amo10g2872 408 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Amo10g2872 408 MobiDBLite consensus disorder prediction 162 209 - -
Amo10g2872 408 MobiDBLite consensus disorder prediction 348 370 - -
Amo10g2872 408 MobiDBLite consensus disorder prediction 1 119 - -
Amo10g2872 408 Coils Coil 294 314 - -
Amo10g2872 408 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 408 IPR044848 GO:0003700
Amo10g2872 408 MobiDBLite consensus disorder prediction 27 105 - -
Amo10g2872 408 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 408 - -
Amo10g2872 408 MobiDBLite consensus disorder prediction 179 208 - -
Amo10g2872 408 Pfam MYB-CC type transfactor, LHEQLE motif 293 337 IPR025756 -
Amo10g2872 408 SUPERFAMILY Homeodomain-like 204 260 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2872 Amo-Chr10 93937951 93941863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2872 31 353 G2-like Transcription Factor Family AT3G04450 46.176 1.55e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo10g2872 Myb_DNA-binding 1.3e-08 CL0123