Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2854 ATGCCAGAGGCAAGCAGAGTTGATTCTTTTTGTTTGTCCGACTTTGATCAATCAATTGGAAATCACTTGGAGAATGCTGTCGAATTGAATGGAAATCCTGTAAATAACTCACTGAAAGTAAGTAGCCAGACGATTTCTCCTGGTCCTGTTCACCTTGGCACTTCTGATAGGTTGCCAATTTCAGTTGATAGAAGCTCATTTATGTACCTAGAAGACCGACTGAGTTTGCTGGCACAAAAGGTACAATCAACAAATCACATTATAATACCAAGTGGTGATACAGAAAACCAGGAAGGGTCTGCCATGGCTGATGCCAGTCCTAGAACTGATATTTCTACAGATGCCGATACTGATGATAAGAATCAGCGGTTTGATGGAAGTCAATCCCTTGCTGCTGTGGCTTCAGACTCAAGTGACAGATCAAAGGATAAAACAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAGGCTGCAAGGAAAAGCCGATTGCGAAAGAAAGCTTATGTTCAACAATTGGAAAGTAGTCGTTTGAAGTTGACGCAATTGGARCAAGAGCTTCAGCGAGCCAGGCAGCAGGGAATCTTCATATCAAGTTCAGGTGATCAAGCACATTCAATGAGCGGCAATGGGGCCATGCAATTCGATGTCGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTTAGAGCTGCTGTAAATTCTCATGCAAGTGATACAGAACTTCGAATGATTATTGATGGTATATTGGCGCATTATGATGACATATTTCGGCTGAAGGGCGTTGCAGCTAAGGCTGATGTCTTCCACCTGTTGTCTGGCATGTGGAAAACCCCAGCTGAGAGGTGTTTTCTGTGGCTCGGTGGCTTTCGGTCATCTGAACTCCTTAAGCTCCTGGTAAATCAGTTGGAGCCTCTCACTGAGCAGCAGTTGGTGGGTATTACCAACTTACAACAGTCTTCTCAACAGGCAGAGGATGCATTGTCTCAGGGCATGGAAGCACTGCAACAATCTCTTGCAGAGACTTTGTCCTCTGGATCACTTGGCTCATCCGGTTCATCAGGGAATGTCGCAAATTACATGGGTCAAATGGCCATGGCCATGGGTAAGCTAGGGACACTCGAGGGGTTTATTCGGCAGGCTGACAATTTGCGCCAGCAGACATTGCAACAAATGCACCGCATATTGACTACTCGCCAATCGGCTCGTGCTCTCCTTGCAATACACGACTATTTTTCAAGGCTGCGCGCTCTTAGTTCCCTCTGGCTCGCCCGCCCAAGAGATTAA 1302 0.4608 MPEASRVDSFCLSDFDQSIGNHLENAVELNGNPVNNSLKVSSQTISPGPVHLGTSDRLPISVDRSSFMYLEDRLSLLAQKVQSTNHIIIPSGDTENQEGSAMADASPRTDISTDADTDDKNQRFDGSQSLAAVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMQFDVEYARWLEEQNRQINELRAAVNSHASDTELRMIIDGILAHYDDIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2854 433 SUPERFAMILY Leucine zipper domain 148 191 IPR046347 GO:0003700|GO:0006355
Amo10g2854 433 SMART brlzneu 144 207 IPR004827 GO:0003700|GO:0006355
Amo10g2854 433 Pfam Seed dormancy control 230 305 IPR025422 GO:0006351|GO:0043565
Amo10g2854 433 PANTHER TRANSCRIPTION FACTOR TGA9 26 433 - -
Amo10g2854 433 MobiDBLite consensus disorder prediction 88 107 - -
Amo10g2854 433 Coils Coil 167 194 - -
Amo10g2854 433 Coils Coil 224 244 - -
Amo10g2854 433 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 151 166 IPR004827 GO:0003700|GO:0006355
Amo10g2854 433 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 26 433 - -
Amo10g2854 433 ProSiteProfiles DOG1 domain profile. 213 430 IPR025422 GO:0006351|GO:0043565
Amo10g2854 433 MobiDBLite consensus disorder prediction 88 150 - -
Amo10g2854 433 CDD bZIP_HBP1b-like 148 200 - -
Amo10g2854 433 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 146 190 IPR004827 GO:0003700|GO:0006355
Amo10g2854 433 Gene3D - 147 199 - -
Amo10g2854 433 Pfam bZIP transcription factor 148 188 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2854 Amo-Chr10 93576270 93582285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2854 102 433 bZIP Transcription Factor Family AT3G12250 79.518 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo10g2854 DOG1 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2854 K14431 - gmx:100816123 652.514