Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2848 ATGGGAAGACCTCCTTGCTGTGACAAAACCAATGTGAAGAGGGGTCTTTGGACTCCTGAGGAAGATGCTAAGATACTTGCTTATGTCTCCAACCATGGAATTGGAAACTGGACCTTGGTTCCCAAGAAAGCAGGACTGAACCGATGCGGAAAGAGCTGCCGGCTAAGATGGACTAACTACCTCAGACCGGATCTCAAGCATGACAATTTCACTCCCCAAGAAGAAGAGCTCATTATTAACCTTCATGCAGCTATAGGAAGCAGATGGTCATTAATTGCGAAACGGCTTCCCGGGAGAACAGACAATGATGTWAAGAATTACTGGAACACAAAGCTGAGGAAAAAGCTTATGAACATGGGAATCGATCCGGTAACTCATAAGCCGGTGTCACAAGTCCTTTCTGACTTGGGAAGCATCAATGGCCTCCCAAGCACAGGAAACCAAATTGGTTTAGCCGCCAACAAGGATTTGATGAACAATATGTTACCAACCAGAACAGAACCATCCAACCCAATGGTGGAGCAGACACAAGAGGAACAAGCTCAATTTTGGGAAAATCAGGTGCAATACCAAGTCTTGGCCTCAGAATGTGTCCAACCAAATGTAGTCTTCAGCGAAGCTGCTTCGTCGAGTTCTTCWTCATCATCCTCCAATCTCACTCAATTGAGCTCCCCTCAGCAGTCATATAACTGTCACAATTCTCAAATAACTCCTTGTTCCTCGTCGTTTGATTGGAGTGACTTTCTTCATGGTGACTCAATCATGTGGTCAGAGATGCAGCAGTGTGATCCACAGAGGGTTATGTCATCCAGTGAGGCATTCGGCGCTGTTGCTTGCGGCGCAAGCATGTGTGAAGGCCGTTCAAATTCAGGGGATTCATTTGTGGATGGTATTTTGGACAGGGACAGTGAAATAAGYGCAGCATTCCCTGAACTTTTGGATGATGCTTTTGATTATTGA 960 0.4562 MGRPPCCDKTNVKRGLWTPEEDAKILAYVSNHGIGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDNFTPQEEELIINLHAAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMNMGIDPVTHKPVSQVLSDLGSINGLPSTGNQIGLAANKDLMNNMLPTRTEPSNPMVEQTQEEQAQFWENQVQYQVLASECVQPNVVFSEAASSSSSSSSSNLTQLSSPQQSYNCHNSQITPCSSSFDWSDFLHGDSIMWSEMQQCDPQRVMSSSEAFGAVACGASMCEGRSNSGDSFVDGILDRDSEISAAFPELLDDAFDY* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2848 319 CDD SANT 69 112 IPR001005 -
Amo10g2848 319 PANTHER F14D16.11-RELATED 1 319 - -
Amo10g2848 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Amo10g2848 319 PANTHER F14D16.11-RELATED 1 319 - -
Amo10g2848 319 CDD SANT 17 61 IPR001005 -
Amo10g2848 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo10g2848 319 Gene3D - 7 67 - -
Amo10g2848 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo10g2848 319 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Amo10g2848 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo10g2848 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Amo10g2848 319 Gene3D - 68 131 - -
Amo10g2848 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo10g2848 319 SMART sant 66 114 IPR001005 -
Amo10g2848 319 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2848 Amo-Chr10 93528319 93529901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2848 1 319 MYB Transcription Factor Family AT3G28470 50.294 9.51e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo10g2848 Myb_DNA-binding 6.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2848 K09422 - gmx:100815077 436.417