LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo10g2785	ATGAACTTGAAGAGTTATACGTATAGCATAACCTCTGCCATATCCACYCTCCTTTATWTTTCTTTCTTGTTCCTCTCGGACTTGGCCATATCTATTGAAGCTTATGTTCCAGTTGATAGCTTCACYGTCAACTGTGGCTCAACTGGCAATTTCTCCGACGGTGAAAGGTCATGGAGCGGAGACAYAGACTCAAAGTTCTTAAWTCTTCAAGACACAAAAACCATCGTTGCTCAACCAGCCACACAAWCTTCTCCGAACAAAGTTCCATATACCAGTGCTCGCTTGTCTAACTCTGAATTCAGTTACTCCTTCCCRGTCACAGYTGGCCGRAAATTTGTTCGTCTCTTCTTCTACCCTGCTTCTTACGCTGGCTTTGACCGTMATAACGCCTTCTTCACGGTCAAATCCGAGGGWTTCACACTCCTTAAGGATTTCAACGCTTCGCTYAACGCCGATGCTKCAAACAGWGACACCATCTTTAAAGAATACATMATCAACGTGGATGATGGGCAGAGGATCAACCTAACCTTCACTCCAAACACATCCCATCCAAATTCTTACGCGTTTGTGAATGGAATTGAAGTGGTGGCCATGCCCAWTGATCTCTACTTCACTGAACCCAGCGGACAACAAGTTGTATTTGTGGGTYAKCCAGGYGYCWCATACAMTATGCAAAACAGTAGCGCCCTGCAGACAGACTACAGRATCAAAGTTGGCGGCAAYACAATCSCACCTAAAGCTGATACTGGCATGCTCCGGAATTGGGCAGGAGATGATGCTGATTATTTAAGAACGCCAAGTGCTCTGTATATGCTATYCGCTRATGAGACCGGAAAGATGAACATCACTGTGAGTCCTGATTATGAAGCACCCATTGAACTCTACAGAACATCACGTKAKATGGGCAAGAATGGAACYCTCAACCAAATGATAAATTTGACCTGGGAGTTTCCTGTTGATTCTGGCTTCACCTACATGCTCAGGCTTCACTTTTGCGAGCTAGACCCAARCATTAMTAAAACCGGTGACAGAGTGTTCAACATCTACATAGCAGGCCAGTTGGCGGAGGACCGTGCCAATGTTCTAAGATGGAGCAARCAAAAGGGAATTGCTGTACAGAGAGACTATGCAGTTACGATCCCAGGGACTACTCAAGACAAGTTTAACCTTTCACTCCAAATGCAYCCTTCATCATTCGTATGGTACAGCGACCCTTTCTTGAACGGCCTTGAAATCTTCAAGATTAGTGACCCCGCTTCGAACAGCCTCGCCGGGCYGAACCCGAACCTGKCCAGTGTCCCGGGTCAACWCAACCCGCCAAAGTCAACCAACTCAAAGAGCAGCAACAAGGCGACTATAATCGGTGTCGTGGTGGGCGCAGCATGYGGCGTCGTTTTGCTCTCTGCTATCGCCTTCTTCCTCCTCAGCCGTCGCAACAAGMCAAAGACGAGCGTTATCCTGAAGGACTCAAAGTCCAACAACACCTCCAAGTGGGGCCCACTCTCCTTCGCCACGACCAAGTCAACCAGCACACAGAAATCYTCACTCCCCTCCGATCTCTGCCGCCACTTCTCCCTCGTCGAGATCCGCGCCGCCACAAACAACTTCGACGACCTCTTCATCGTCGGTGCCGGAGGATTCGGCCACGTGTACAAGGGCTAYATCGACGGCGGAACCACCCCCGTCGCCATCAAGCGCCTCAAGCCAGGSTCCCAGCAGGGAGAACACGAGTTCATGAACGAGATCGAGATGCTCTCGCAGCTTCGCCACCTTCATCTCGTTTCGCTAATCGGTTACTGCAACGAGAGCAACGAGATGATCCTWGTCTACGATTTCATGGACCGTGGAACCCTCCGCGACCATCTCTACAACACCGAAAACCCTTCCATCAAATGGAAGCAGCGGTTACAGATCTGCATCGGTGCAGCGCGTGGACTACACTACCTTCATACAGGCGCGAAGCACACGATCATCCACCGAGACGTGAAAACCACGAATATCTTGTTGGATGATAAGTGGGTGGCTAAGGTTTCTGATTTTGGCTTATCGAGAATTGGGCCTACCGGTAATACTAAAGCCCATGTGAGCACRGTAGTGAAGGGTAGCGTTGGGTATTTGGATCCGGAGTACTATAAACGACAGCGTTTAACGGAGAAGTCTGACGTGTACTCTTTTGGTGTGGTGTTGTTTGAGATACTATGCGCAAGGCCGCCTCTGATCCGTACGGCTGAGAAGAAACAGGTRTCGCTTGTTGATTGGGCGAGRCACTGCTGGAACAACGGGTCGTTGGGTCAGATTGTGGACCCCGCTTTGAAAGGCTCTATTGCTCCCGAGTGTTTGAGGAAGTTCGGTGAGATTGCTGTTAGTTGTTTGTTGGATGATGGAACGCTGAGGCCGTCCATGAACGACGTCGTTTGGATGCTGGAGTTTGCGTTGCAGCTTCAAGAGAGTGCGGAGCAGCGTGACCGTGCGATTGGGATTGRGRTGCCTGATGGTGATGATGAGGAGGATCGTGCGGTTGAGAAGAGAGAAGAGAGTGATGACATGTTTAGTAGTGGAACCAGCGTTGGGCAAGTTTCTGACTTTAACAAGAGTAGTGGTGTGAGTATGATGAGTAGTAGTGGAGATAATAGTTATGGTAATAAGGACACTGATAGGTTTTTGTCTGGGACTGTTTTCTCTGAGATTATGGATCCAAAGGCTCGCTGA	2709	0.4836	MNLKSYTYSITSAISTLLYXSFLFLSDLAISIEAYVPVDSFTVNCGSTGNFSDGERSWSGDXDSKFLXLQDTKTIVAQPATQXSPNKVPYTSARLSNSEFSYSFPVTXGRKFVRLFFYPASYAGFDRXNAFFTVKSEGFTLLKDFNASLNADAXNXDTIFKEYIINVDDGQRINLTFTPNTSHPNSYAFVNGIEVVAMPXDLYFTEPSGQQVVFVGXPGXXYXMQNSSALQTDYRIKVGGNTIXPKADTGMLRNWAGDDADYLRTPSALYMLXAXETGKMNITVSPDYEAPIELYRTSRXMGKNGTLNQMINLTWEFPVDSGFTYMLRLHFCELDPXIXKTGDRVFNIYIAGQLAEDRANVLRWSKQKGIAVQRDYAVTIPGTTQDKFNLSLQMHPSSFVWYSDPFLNGLEIFKISDPASNSLAGXNPNLXSVPGQXNPPKSTNSKSSNKATIIGVVVGAACGVVLLSAIAFFLLSRRNKXKTSVILKDSKSNNTSKWGPLSFATTKSTSTQKSSLPSDLCRHFSLVEIRAATNNFDDLFIVGAGGFGHVYKGYIDGGTTPVAIKRLKPGSQQGEHEFMNEIEMLSQLRHLHLVSLIGYCNESNEMILVYDFMDRGTLRDHLYNTENPSIKWKQRLQICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSDFGLSRIGPTGNTKAHVSTVVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLFEILCARPPLIRTAEKKQVSLVDWARHCWNNGSLGQIVDPALKGSIAPECLRKFGEIAVSCLLDDGTLRPSMNDVVWMLEFALQLQESAEQRDRAIGIXXPDGDDEEDRAVEKREESDDMFSSGTSVGQVSDFNKSSGVSMMSSSGDNSYGNKDTDRFLSGTVFSEIMDPKAR*	903

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo10g2785	902	ProSitePatterns	Protein kinases ATP-binding region signature.	542	565	IPR017441	GO:0005524
	Amo10g2785	902	Pfam	Protein tyrosine and serine/threonine kinase	542	805	IPR001245	GO:0004672\|GO:0006468
	Amo10g2785	902	Gene3D	Phosphorylase Kinase; domain 1	499	612	-	-
	Amo10g2785	902	ProSiteProfiles	Protein kinase domain profile.	536	811	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo10g2785	902	Gene3D	Transferase(Phosphotransferase) domain 1	613	829	-	-
	Amo10g2785	902	MobiDBLite	consensus disorder prediction	824	884	-	-
	Amo10g2785	902	MobiDBLite	consensus disorder prediction	424	446	-	-
	Amo10g2785	902	MobiDBLite	consensus disorder prediction	826	849	-	-
	Amo10g2785	902	CDD	STKc_IRAK	542	809	-	-
	Amo10g2785	902	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	657	669	IPR008271	GO:0004672\|GO:0006468
	Amo10g2785	902	Pfam	Malectin-like domain	43	415	IPR024788	-
	Amo10g2785	902	PANTHER	OS07G0166700 PROTEIN	24	858	IPR045272	GO:0004714\|GO:0006468
	Amo10g2785	902	PANTHER	RECEPTOR-LIKE PROTEIN KINASE FERONIA	24	858	-	-
	Amo10g2785	902	Gene3D	-	40	199	-	-
	Amo10g2785	902	Gene3D	-	229	416	-	-
	Amo10g2785	902	SUPERFAMILY	Protein kinase-like (PK-like)	509	811	IPR011009	-
	Amo10g2785	902	SMART	serkin_6	536	811	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo10g2785	902	MobiDBLite	consensus disorder prediction	850	884	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo10g2785	Amo-Chr10	92865992	92868700	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo10g2785	30	902	Receptor kinase-like Gene Family	AT3G51550	50.056	0.0	803

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Amo10g2785		Malectin_like	5.7e-42	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo10g2785	-		-	gsj:114381619	1139.79