Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2781 ATGCTAGAGAGATTGAAAGTTGACGAATGCAAGTTGTATTTGCGAAAGAATTGTCTTAGGCTATCTGGAAATAAGGATGTACTCGTCCAGCGTATTAAGGAGCATCTGCAGATCATAAATGGTGGAGGCGAAAGAAAGTACCCACGCTCTAGCTTTGTGTTGGACTGTAAAGGTGATGCATGCACTGGGGATGTTGTTTTGTTTGAGCAGAATGTTTATGAAATGTTCAACATAGCATCTAGAAGTGCCAGCGGTCCATCATGTGGTAAAAGGACTGTTGCAGGTCGCATAGTGAAAGAAAGCTATGGCACTGCCAAGCAGCAGCATACTTTTACGATTGAAGTACTATGGAGCAAAGGAGAAAAGCCTTTTCCTCCYCTTCATCCCCTATTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGGAAAGGCAGAAAATATTGACGGAGAAACACTCGAGGGGATCTATTGCTCGGGCAGATAGAGAAGCAAGGGTACAAGAAAAAGTGAACAGACAAGCAATTGTGGAAAACAGGGTCTCCAGAAAGCATTCAGTAATACATCATCCTCATGCCATTAATCAAGAAAAACCAGCATTCCCATCTAAGAGTTCAGCTGTATCTGCCATTAATCAAGAAAAACCACCATTCCCATCAGCAGTGACCGAACAGTGGAGTAAGTCTGCTAGTTCTAGACGATCGAATGAATCGACATCATTTGGTGTTAACCATGTAAATAACCAGCAAGATTGGAAGCACTCATCTGACCCAATCATTAAAGCTCAACTTGGTGACCTCCACTCCAAAGAAAAAGGGCAATACCAATACCATCCTAGTGAGAGAAACAGGTTTGCACACAGAAATCCTTTGACTAGTGCTAATCACCTTCTTCCGTTGCTGAACAACAGAGAAATCCACAAGCAAAAGCAGCTATGTAGATATTATGCTGGTGGGGGGTGCTATTTTGGGGACAATTGCAAATTTGTACATGATTTGATACTATCAAATCAAGAACAAAGTCTTATCCAGTAG 1059 0.4193 MLERLKVDECKLYLRKNCLRLSGNKDVLVQRIKEHLQIINGGGERKYPRSSFVLDCKGDACTGDVVLFEQNVYEMFNIASRSASGPSCGKRTVAGRIVKESYGTAKQQHTFTIEVLWSKGEKPFPPLHPLLIKGRNLYRLKTLRQKWEDEGERQKILTEKHSRGSIARADREARVQEKVNRQAIVENRVSRKHSVIHHPHAINQEKPAFPSKSSAVSAINQEKPPFPSAVTEQWSKSASSRRSNESTSFGVNHVNNQQDWKHSSDPIIKAQLGDLHSKEKGQYQYHPSERNRFAHRNPLTSANHLLPLLNNREIHKQKQLCRYYAGGGCYFGDNCKFVHDLILSNQEQSLIQ* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2781 352 Gene3D - 271 349 - -
Amo10g2781 352 SUPERFAMILY CCCH zinc finger 315 340 IPR036855 GO:0046872
Amo10g2781 352 SMART c3hfinal6 316 341 IPR000571 GO:0046872
Amo10g2781 352 MobiDBLite consensus disorder prediction 199 264 - -
Amo10g2781 352 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 2 340 - -
Amo10g2781 352 Pfam SAP domain 2 36 IPR003034 -
Amo10g2781 352 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 2 340 IPR045124 GO:0003723|GO:0045892
Amo10g2781 352 Pfam CCCH-type zinc finger 320 340 IPR041367 -
Amo10g2781 352 ProSiteProfiles Zinc finger C3H1-type profile. 316 342 IPR000571 GO:0046872
Amo10g2781 352 MobiDBLite consensus disorder prediction 207 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2781 Amo-Chr10 92849584 92853215 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo10g2781 SAP 5.6e-07 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2781 - - ahf:112777670 679.863