Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2777 ATGGAGAAGGTACCAGGGATGGAAGGCAACGCTGAGAGTCAAATGACTTCGGCTGCGGCCTTCGTCGAAGGAGGGATTCAAGAATCATGTGATGATGCTTGCAGCATATGCCTTGAGGATTTCTCCGAAAGTGATCCTTCGACAACCACTGCATGCAGGCATGAGTTTCACCTTCAATGTGTTCTTGAATGGTGCCAGAGAAGCTCTCAGTGCCCTATGTGTTGGCAACCTATTAGCATGAAGGATCCAACCAGTCAAGAGCTGTTTGAGGCAGTAGAACGGGAAAGGAAGTTGAGGGCTATCGCACCAAGGACTGCTGCTATCTTTCACCACCCTGCCTTTGGTGATTTTGGACTGCAGCATTTAGGCATAAGTGATGCTGATCTTGAACAACGAATAATTCAACATTTAGCTGCAGCAGCAGCAGTTGGGAGATCACACCATCATGCTTGGAGGGAAGGGCATCAAACTAGGGCATCTGCTCATGGTCATCCACCCGTTATCGTTTTGTCATCTCAGCCAAGTGCACCGCAAGTCCCTGAATCAGCTCCTAGAGGGGGAGACGAACCAGCTACAAATCCTTTAGGAACTCCATCTAGTCCTATGACATCCCGTGGAGGTGAAATATCACGGCAGATCCCACATCTTCAGACTCAAAGCTCTTCTTCAGCTCCTCGGGATAGAGACTCTATTGTGCAATCTTCTCCAGCAAACCAAGATAGAGCAGGGCCATCAGAATCCCAGTCCATTTCTGATTCTCTGCGGGCCCGATTTAGTGCGTTGTCCATGAGATACAAAGAGTCAATTTCAAAAGGCGCAAGGGGATGGAAGGAGAGGCTGTTTTGTCATGGTTCTTCCATGTCAAAAGTTGGCTCAGAAGCTAGGAGAGAGGCTGGAATTGCCGGCGTCACACAATTGGTGCAATCCCAATCTCTTCAAAATAGAGCAACTTATAGAACTGCGACTACCTCTTTGTCAAATCATTTGGAGGATCATCCCACTGGAGAGGTGACCAACCAGAACAGGGGAGCTAGAAGAGAGAATGCATCGCATGATAACACTCCAGCTGCTTGTTCTGCTAGCTCACGTTCGAATTGA 1098 0.4836 MEKVPGMEGNAESQMTSAAAFVEGGIQESCDDACSICLEDFSESDPSTTTACRHEFHLQCVLEWCQRSSQCPMCWQPISMKDPTSQELFEAVERERKLRAIAPRTAAIFHHPAFGDFGLQHLGISDADLEQRIIQHLAAAAAVGRSHHHAWREGHQTRASAHGHPPVIVLSSQPSAPQVPESAPRGGDEPATNPLGTPSSPMTSRGGEISRQIPHLQTQSSSSAPRDRDSIVQSSPANQDRAGPSESQSISDSLRARFSALSMRYKESISKGARGWKERLFCHGSSMSKVGSEARREAGIAGVTQLVQSQSLQNRATYRTATTSLSNHLEDHPTGEVTNQNRGARRENASHDNTPAACSASSRSN* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2777 365 MobiDBLite consensus disorder prediction 324 365 - -
Amo10g2777 365 MobiDBLite consensus disorder prediction 324 344 - -
Amo10g2777 365 SUPERFAMILY RING/U-box 26 82 - -
Amo10g2777 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 84 IPR013083 -
Amo10g2777 365 MobiDBLite consensus disorder prediction 193 252 - -
Amo10g2777 365 SMART ring_2 34 74 IPR001841 -
Amo10g2777 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 8 362 - -
Amo10g2777 365 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 8 362 - -
Amo10g2777 365 Pfam Ring finger domain 33 74 IPR001841 -
Amo10g2777 365 MobiDBLite consensus disorder prediction 148 252 - -
Amo10g2777 365 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2777 Amo-Chr10 92804090 92808960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2777 31 82 C3H Transcription Factor Family AT4G00335 48.077 2.17e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2777 K19043 - gmx:100800419 451.44