Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2767 ATGTTGTCTTGTTCCGTTGCCAAAATCCGATTCTTCATCAAACCGCCTCCATGCATTTTGCTCTTCTTCCTTCTCTCTTTCACCTCCTTCTCTTCAACAGAAGCCTATGATGTGCTTGATCCAAACGGAAACATTACAATCAGATGGGATATTATAAGCTGGACACCAGATGGTTATGTTGCTGTTGTTACATTAAACAATTTCCAGCAATACCGTCACATCTCGGCGCCAGGGTGGTCGCTAGGATGGACATGGGCAAAGAAAGAGGTAATATGGAGCATGATGGGAGGGCAGACTACCGAACAAGGCGATTGCTCGAAATTCAAGACAACCCCACCACATTGCTGTAAAAAGGACCCAACCGTTGTAGATTTACTTCCTGGAACACCATACAATCAACAAATTGCAAATTGTTGCAAAGGAGGTGTACTCAGCTCATGGGGACAGGATCCGGCAAATGCCATTGCATCATTTCAAATCAGTGTTGGTAGAGCTGGAACCTCTAACAAAACAGTCAGGGTGCCCAAGAACTTCACCTTGAAAGCACCGGGACCGGGTTATACCTGTGGGCCGGGAAAAATTGTTCAACCTACTCAATTCTTAACAGGAGATAAAAGAAGAAGAACTCAAGCTCTCATGACATGGAATGTGACATGCATGTATTCACAATTTCTAGCTCAGAAAACTCCCAGTTGCTGTGTTTCACTCTCATCTTTCTATAATGATACCATTGTACCCTGCCCGACATGTTCGTGTGGCTGCCAGGGAAACTCTTCTCAATCCGGGAACTGTGTAGATCCAGATAAACCGCATTTGGCATCGGTTGTTGCTAACCCTGCAAAGAGTTCCCCTTTCGTTCAATGTACTCGCCATATGTGTCCTGTCCGAGTTCATTGGCATGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACTATTACTAATTTCAATTACAAGATGAACTATACAGATTGGAACTTGGTTATTCAACACCCGAATTTCGACAATTTGACTCAGCTTTTTAGTTTTAACTACAAGTCATTGACACCCTATGGCACAATAAATGATACAGCATTGCTATGGGGAATTAAGTTCTACAATGATTTGCTCATGGAAGCCGGTCCGGAAGGTAATGTACAATCAGAGCTACTCTTCCGAAAGGATAAATCAACTTTTACTTTCGACAAAGGTTGGGCGTTTCCTCGGAGGATCTATTTCAATGGTGACAACTGTGTGATGCCACCACCTGATGCTTATCCGTGGCTGCCAAATGCCAGTTCCCGGCGAGAGGTTTCCTTGCTAGCTTTAGTGCTGGCTTCCTTTGTAGCCTTGGCATTGTGTGCATATGCTTAA 1359 0.4408 MLSCSVAKIRFFIKPPPCILLFFLLSFTSFSSTEAYDVLDPNGNITIRWDIISWTPDGYVAVVTLNNFQQYRHISAPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKFKTTPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWGQDPANAIASFQISVGRAGTSNKTVRVPKNFTLKAPGPGYTCGPGKIVQPTQFLTGDKRRRTQALMTWNVTCMYSQFLAQKTPSCCVSLSSFYNDTIVPCPTCSCGCQGNSSQSGNCVDPDKPHLASVVANPAKSSPFVQCTRHMCPVRVHWHVKLNYKEYWRVKVTITNFNYKMNYTDWNLVIQHPNFDNLTQLFSFNYKSLTPYGTINDTALLWGIKFYNDLLMEAGPEGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSRREVSLLALVLASFVALALCAYA* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2767 452 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0031225
Amo10g2767 452 PIRSF COBRA 9 452 IPR006918 GO:0010215|GO:0031225
Amo10g2767 452 PANTHER COBRA-LIKE PROTEIN 11 450 - -
Amo10g2767 452 PANTHER PROTEIN COBRA 11 450 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2767 Amo-Chr10 92484344 92487546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2767 19 448 COBRA Gene Family AT3G02210 74.827 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2767 - - gmx:100783820 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3493 20 144917049 144919655 Amo10g2767 10 92484344 92487546 hybridization
Amo10g2767 10 92484344 92487546 Amo14g3833 14 143818729 143820682 PCT