Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2740 ATGATGGACAAGGAAAGTGAAGAATTGGCATTAACCCCAGAAGTGACTAAGCCGGATACGGTTGAAACAAGAAGGTTCTCTTCTGGCAAAGGATCTTCTGGAAATAGCACTGCAAAAGTTGTTCCTCGTTATCTCCGAGCTTCAACTGGTTCTTGTCATGATTTTTGTAAATATGGGAGGAAGCACGAACTTGAAGGGAATGAAAGGCGTTCTATACCTGATAGAGCTACACGAAAACAACTTTACCAGAGTTCTCAAAAGAGTATTGGGGGGATAATGACATCGGTTGCCAAACTCAGAGGGTCACTTGATTCAAGGTTGCCTTTTGTCAAACTACAAGAATCAATTGATTCCGAGCATGACATTTCCGATACTGCTGGCACCAATAAGCATGGACTGTCAACAAAATCATTCGACAAGGAAAAGCAAATAGGGAATGATGCTCCGGAAAACTGGAAGAAAACATCGTTGGTCAAGTTCAAACCCTCCCTCCTGAAATCCCATACATCTCCATTGGCAATACAGGAAATTTCAACGACTGCAAAGGAGGTGAAATCTTCATTGAAATCAACTTCTCTCAAGTTGGAAACTTCACCAAAATCAGCTTCTAAGAAGGTGGAAGCTCCATCAAATTTAAGTTCCAAGAAGGTGAAAGCTCAATCAAAGTCAATTTCCAACAATGGGGAAACACCATCAAGATCAGATTCCAAGGTCAAAACTTCATCAAGATCAACTTCCAACCTGGTGGGAACTTCGTCGGAGGCATCTTCTTTAAAGGGTAATAAGGACATGAAGTTGTCTGAAAAACGGGTAACTTCTTTGAGCCCAGACTCTGCCACAAGGAACACAATTTCAACTATGAAATCCTCGAAAAGCTTTGGTAGCAAAATGAATAGTGAGATCAAGATGGAAAAGGATGCAGCCTCTTCCAAAACAGCTTCAAGAAAATTGATAGCACCAATAAGGACCCCAGTGTCCCCAAGACCTTCTCTTGTAAGAGTTGCAAGTTTAAATTCAAGAAAGAATAAGAGCCTGAAAATCGTGTCTCGTCTTAAGAATCAGCAGAATGCCAGAAAAGTTGCACCTGAGGAATCCAACAATAATGACAATCAGGTCGAGGAAAAAACTCTGTACGTTATCAAGATGGAAAGTGGGAACAAAACTTTGGAATCTGATCAAAATCCAAGCTATGACAATGAACCATCCCTTCCGCAGATGTCACCGCCAAACCCTTCACCGCCTTCAACTTCTGAATCTGTATCCCAAGAAGATCAAGAGGAATCTGACTATACAACTAGTGAATTCGAGATGGATTCTTTCTCAAGTAACCATGAGCTTGAAAACATGGAAAATAGGGAGACTTTGGAAGTTGAGGAGAAGGGAAAGCCGACAAAGGGTGGGATTGTGTGCTCCGATGATGTGGCCCAAGTGCTGAAATTGAAGTTCAGAAGGGGAAAAGTTGTCGATAATCAACTTGAGAGAAACACTCCAAGGAGGCTAAAATTTCGGAGAGCAAAACTGTTGGGGGAGAAAGCAAATCTTAAGGGTGGAAGGAAAAGCCTTAAAGGACTAGATGAAGGTTTTGCTGATGGAGCCGATGCTACAACTGGTCCAGAGAAGGTTGTCTTGAGACATCAAGATATGCAGGACAAGAAAGATGCTCAGGGATTGTTCAATAACGTGATCGAGGAAACGGCGAGTAAACTAGTCGAAGCACGGAAGAGCAAGGTTAAAGCATTGGTTGGTGCTTTTGAAACTGTAATCTCCCTCCAAGAGAAGAAACCTCCTGCTAACACTGTCAGTTGA 1806 0.4219 MMDKESEELALTPEVTKPDTVETRRFSSGKGSSGNSTAKVVPRYLRASTGSCHDFCKYGRKHELEGNERRSIPDRATRKQLYQSSQKSIGGIMTSVAKLRGSLDSRLPFVKLQESIDSEHDISDTAGTNKHGLSTKSFDKEKQIGNDAPENWKKTSLVKFKPSLLKSHTSPLAIQEISTTAKEVKSSLKSTSLKLETSPKSASKKVEAPSNLSSKKVKAQSKSISNNGETPSRSDSKVKTSSRSTSNLVGTSSEASSLKGNKDMKLSEKRVTSLSPDSATRNTISTMKSSKSFGSKMNSEIKMEKDAASSKTASRKLIAPIRTPVSPRPSLVRVASLNSRKNKSLKIVSRLKNQQNARKVAPEESNNNDNQVEEKTLYVIKMESGNKTLESDQNPSYDNEPSLPQMSPPNPSPPSTSESVSQEDQEESDYTTSEFEMDSFSSNHELENMENRETLEVEEKGKPTKGGIVCSDDVAQVLKLKFRRGKVVDNQLERNTPRRLKFRRAKLLGEKANLKGGRKSLKGLDEGFADGADATTGPEKVVLRHQDMQDKKDAQGLFNNVIEETASKLVEARKSKVKALVGAFETVISLQEKKPPANTVS* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2740 601 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 2 476 - -
Amo10g2740 601 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 481 598 - -
Amo10g2740 601 MobiDBLite consensus disorder prediction 25 39 - -
Amo10g2740 601 MobiDBLite consensus disorder prediction 387 401 - -
Amo10g2740 601 SMART CaM_binding_2 476 589 IPR012417 GO:0005516
Amo10g2740 601 PANTHER EMB|CAB62594.1 481 598 - -
Amo10g2740 601 MobiDBLite consensus disorder prediction 1 24 - -
Amo10g2740 601 MobiDBLite consensus disorder prediction 271 297 - -
Amo10g2740 601 MobiDBLite consensus disorder prediction 1 41 - -
Amo10g2740 601 MobiDBLite consensus disorder prediction 387 449 - -
Amo10g2740 601 MobiDBLite consensus disorder prediction 350 373 - -
Amo10g2740 601 MobiDBLite consensus disorder prediction 134 148 - -
Amo10g2740 601 MobiDBLite consensus disorder prediction 186 260 - -
Amo10g2740 601 Pfam Plant calmodulin-binding domain 479 589 IPR012417 GO:0005516
Amo10g2740 601 MobiDBLite consensus disorder prediction 121 149 - -
Amo10g2740 601 PANTHER EMB|CAB62594.1 2 476 - -
Amo10g2740 601 MobiDBLite consensus disorder prediction 186 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2740 Amo-Chr10 92063577 92066993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2740 539 587 Calmodulin-binding Proteins AT2G38800 46.000 9.32e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2740 - - adu:107471215 1084.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3396 20 143166685 143170324 Amo10g2740 10 92063577 92066993 hybridization
Amo10g2740 10 92063577 92066993 Amo14g3750 14 142656059 142659303 PCT
Amo14g3750 14 142656059 142659303 Amo10g2740 10 92063577 92066993 PCT