Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2731 ATGGAGATAATCACCAACAACGCCACCACCACCATAACAAACCCACCAAAATCACCAGAACCCGAATCAGAAACTCCGACCCGGATTCAACCCACAAACACTAAGCCTGTTTCATTCTCCAACGGAGTACTCAAGCGTCACCACCCTCCACAACACTACCACCACCAACTCGCAAGCCCAACCGCCGTTACCGCCGCCGTGGCGGTTACCTATAAGGAATGCTTGAAGAATCACGCCGCTAGTCTCGGTGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGCCGGCGCCAACTGCTACCGCCGGCGATCCAACCTCCATCAAGTGCGCCGCATGCGGCTGCCACCGTAACTTCCACCGCCGCGATCCCGACGAGCCACCACCACCTCTCTCTCCTGTAATCGAGTACCAACCTCTCCACCGCCACCACCCTCCACCACCAGCTCCGCCACCTCCTCCGTTCCACCACCACCACCACCGGAGCCCTAACTCCGCCTCACCACCTCCGATCTCCTCTTCCTACTACCCTTCCGCACCGCACATGCTCCTCGCTTTGTCCTCGGGCGGCGGCCTCTCCGTTCCACCGGAAAACACCGCCTTACCAGCCTCCAACCACCACCACCACCACCATCTAAGTTCCCGAAAACGGTTCAGAACGAAGTTCACGCAGGAACAGAAGGAGAAGATGCACGTGTTCGCGGAACGCGTGGGTTGGAAGATTCAGAAGCGAGACGAAGATCTTATCCAGGAATTTTGCCATGAAGTCGGTGTTGATCGTGGCGTTCTCAAAGTTTGGATGCACAATAACAAGAACACGTTTGGAAAAAGAGAAAGAGAACAAGGTAATACTAAGAATGTTCTAGAAGGTCCTGGAATCAACGGTGCTGATGACGACAACAACAACAATAACAAGAGCAATGGTTTGAACGGTGGGATGATGATGATGATGAACGGTGGTGATGGTAGCGGTCATGATGATGATGGTAGCGCTGATGCAAACGGTGCCGGTACTAATGGCTCTTCTTCTTCTTCTTGA 1035 0.5459 MEIITNNATTTITNPPKSPEPESETPTRIQPTNTKPVSFSNGVLKRHHPPQHYHHQLASPTAVTAAVAVTYKECLKNHAASLGGHALDGCGEFMPAPTATAGDPTSIKCAACGCHRNFHRRDPDEPPPPLSPVIEYQPLHRHHPPPPAPPPPPFHHHHHRSPNSASPPPISSSYYPSAPHMLLALSSGGGLSVPPENTALPASNHHHHHHLSSRKRFRTKFTQEQKEKMHVFAERVGWKIQKRDEDLIQEFCHEVGVDRGVLKVWMHNNKNTFGKREREQGNTKNVLEGPGINGADDDNNNNNKSNGLNGGMMMMMNGGDGSGHDDDGSADANGAGTNGSSSSS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2731 344 MobiDBLite consensus disorder prediction 1 35 - -
Amo10g2731 344 Gene3D - 201 274 - -
Amo10g2731 344 MobiDBLite consensus disorder prediction 127 152 - -
Amo10g2731 344 MobiDBLite consensus disorder prediction 295 310 - -
Amo10g2731 344 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 122 IPR006456 -
Amo10g2731 344 MobiDBLite consensus disorder prediction 275 344 - -
Amo10g2731 344 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
Amo10g2731 344 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 8 300 - -
Amo10g2731 344 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Amo10g2731 344 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 214 271 IPR006455 -
Amo10g2731 344 MobiDBLite consensus disorder prediction 186 216 - -
Amo10g2731 344 MobiDBLite consensus disorder prediction 119 173 - -
Amo10g2731 344 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 300 - -
Amo10g2731 344 SUPERFAMILY Homeodomain-like 203 275 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2731 Amo-Chr10 91903812 91905397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2731 16 323 ZF-HD Transcription Factor Family AT3G28920 51.572 9.88e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Amo10g2731 ZF-HD_dimer 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2731 - - ahf:112783874 472.241