Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2719 ATGCCGACAGACAGCCACTCGCCGGCGCGGCCAACCATCACCCTGCCGCCGCGTCCCAGCCTGGAGTCCTTCCTGTCGTCGGTAGGAATAAGCCCCGGTCCCATGACTCTGGTGTCGTCGTTCTTTGCGGACGACTACTCCCCTTCACCTTCTTCCTTCTCTCAGCTCCTGTCGGTTACGCCGTCTCCTCTCTTCACCGTGCCACCTGGCTTCAGCCCTTCCGCCTTCCTCTTCTCCCCTACTCACCCTCAGAGCCCCTTTGGGATGTCACATCAGCAGGCTTTAGCACAGGTTACCACTGAAGCTGTGATAGCACAATCACAAGGGCAAATGCAGATTGATGAAGATGATGCTTCAGAGAAGAATGTAGAAGTATCTATGTTTGAAACTTCTCAGATGTCCAATAATGCTGACAAGAAGTATCAGCAGCCTTCGTCCGTGGTGGTCAACAAGCCTGCGGACGATGGCTATAACTGGCGAAAATATGGACAGAAACAGGTTAAGGGGAGTGAGTTTCCGCGGAGCTACTACAAGTGTACACATCTGAGTTGCAATGTGAAGAAAAAGGTTGAGCGTGCCATTGATGGTCACATAACAGAAATCATCTATAAAGGGCAGCATAACCATGAAAAGCCTCATTCCAATAAGCGTAATAAAGATAACAGTGATTCAAATGAAAGTGTAAGCATTCAGCCTAAGTCCGAGTTGAGTTGGGTTGGAAATTCGGATAGTTTTGGCAAAAGCTTTTCTGATTGTTCGATCAGCGAAGATTTGGGTGGTGTAGATATGAGGGAAGAGGAGGGAGGTGATGTTGAACCAAACCCCAAGAGAAGGAACATTGATGTTGAGGTTTATGAAGGACATCAAACGACTGTGACAGAACCCAAAATCATTGTCCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGCTACAAGTGGCGCAAGTATGGGCAGAAAGTGGTGAAGGGTAATCCTCATCCAAGGAGCTATTACAAATGCACAAGTGCAGGGTGCAACGTGCGAAAGCACATCGAGAGAGCTTCAATGGATCCAAAAGCAGTGATAACAACTTATGAGGGAAAACATAATCATGATGTGCCTGCTTCCAGAAAGAGCAGCCATAACACTTCAAAGCCGCATAAAGCGGTGCCTGAGAAGCATCCGGATATGGATTTCGGAAACAGCAACCAAAGACCGATACATTTAAGCTTGAAAGAAGAGCAAATCATAATATGA 1239 0.4722 MPTDSHSPARPTITLPPRPSLESFLSSVGISPGPMTLVSSFFADDYSPSPSSFSQLLSVTPSPLFTVPPGFSPSAFLFSPTHPQSPFGMSHQQALAQVTTEAVIAQSQGQMQIDEDDASEKNVEVSMFETSQMSNNADKKYQQPSSVVVNKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHLSCNVKKKVERAIDGHITEIIYKGQHNHEKPHSNKRNKDNSDSNESVSIQPKSELSWVGNSDSFGKSFSDCSISEDLGGVDMREEEGGDVEPNPKRRNIDVEVYEGHQTTVTEPKIIVQTRSEVDLLDDGYKWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHIERASMDPKAVITTYEGKHNHDVPASRKSSHNTSKPHKAVPEKHPDMDFGNSNQRPIHLSLKEEQIII* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2719 412 MobiDBLite consensus disorder prediction 362 398 - -
Amo10g2719 412 Pfam WRKY DNA -binding domain 309 366 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g2719 412 Pfam WRKY DNA -binding domain 154 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g2719 412 SUPERFAMILY WRKY DNA-binding domain 300 368 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo10g2719 412 ProSiteProfiles WRKY domain profile. 154 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g2719 412 MobiDBLite consensus disorder prediction 379 393 - -
Amo10g2719 412 MobiDBLite consensus disorder prediction 204 239 - -
Amo10g2719 412 MobiDBLite consensus disorder prediction 224 239 - -
Amo10g2719 412 PANTHER WRKY PROTEIN 7 58 - -
Amo10g2719 412 PANTHER WRKY PROTEIN 62 411 - -
Amo10g2719 412 SUPERFAMILY WRKY DNA-binding domain 150 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo10g2719 412 MobiDBLite consensus disorder prediction 204 223 - -
Amo10g2719 412 Gene3D WRKY domain 293 369 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo10g2719 412 Gene3D WRKY domain 137 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo10g2719 412 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 7 58 IPR044810 GO:0003700
Amo10g2719 412 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 411 IPR044810 GO:0003700
Amo10g2719 412 ProSiteProfiles WRKY domain profile. 303 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g2719 412 SMART WRKY_cls 308 367 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo10g2719 412 SMART WRKY_cls 153 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2719 Amo-Chr10 91716036 91718881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2719 9 410 WRKY Transcription Factor Family AT2G03340 43.487 9.00e-121 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo10g2719 WRKY 4.6e-25 CL0274