Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2687 ATGCTTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGAAAAAATTCAAGCTACAGTCAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGACAAGTTTATAGAATGGCATATTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGATGACATTGGTCTTTTAACTTCAGTCGGAGAAGAGAAAGAATATGCAAAAGAGGAGAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATATTCCTGAAGTTGTTGAATTCAGGCGAGGTGTCAATGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTCTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACAATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATTTTTGGTGCAATCCAAGGTATTGTTGAGGATGGAAGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTCACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATACTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGTGGCTTCTTATTTGCTTAAGAAATCATGTGCTTACTTGTTTACTGAGGTTCAAAGAGATGCAAGTCTTATATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTGCTGCTCAAGGAGCATGATTTACATAAATCTGTTCCTTGTGGAAAAGCGGATGTTGGTATTAAGAAGGAGTCTTCGGATAGTTTTATCAAAAGTGAGAAAGATGCTGGGACTGAGTTTGTTGGCTTAATTGATGGTGAACATGGAAAAGAAGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTGGATATATTGCTTAGCTCAGCAGAAAAAGAAACTCAGGAGGTGTTGTCCCATGTTCTTGAAGCACCTTCGCAATATGGAGAGAAGCTTACCCATGAAAATCATGTTGTCACCTCTAAGGGTAAGAGGAATTTGAATCCTCAATTTGAAGTGGCTGCTGTTGATGCAGATGGGCGTGGGTTCAAGGTTGCCAAGGTTAATGGAGTTTGA 1590 0.3862 MLPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHEVPNSMEMILLDEHCEKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSELLNMTQDYDFLVDDIGLLTSVGEEKEYAKEEKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVEFRRGVNGTQPLFIANEGKVLSLEDDFMRLTRKCTIEELQDNNQEGSFIIFGAIQGIVEDGSWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITVEDHTGEGIFLLFDRVASYLLKKSCAYLFTEVQRDASLICGDTYPPIFQGLIGKKLLLKEHDLHKSVPCGKADVGIKKESSDSFIKSEKDAGTEFVGLIDGEHGKEEKTPSNDTVSDDLSAELDILLSSAEKETQEVLSHVLEAPSQYGEKLTHENHVVTSKGKRNLNPQFEVAAVDADGRGFKVAKVNGV* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2687 529 Gene3D - 4 112 IPR012340 -
Amo10g2687 529 SUPERFAMILY Nucleic acid-binding proteins 4 112 IPR012340 -
Amo10g2687 529 CDD RPA1_DBD_A_like 19 107 - -
Amo10g2687 529 Pfam Replication factor-A C terminal domain 288 368 IPR013955 -
Amo10g2687 529 Gene3D - 261 399 IPR012340 -
Amo10g2687 529 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 367 - -
Amo10g2687 529 Gene3D - 114 246 IPR012340 -
Amo10g2687 529 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Amo10g2687 529 CDD RPA1_DBD_B_like 140 240 - -
Amo10g2687 529 Pfam Domain of unknown function DUF223 43 134 IPR003871 -
Amo10g2687 529 CDD RPA1_DBD_C 272 397 IPR013955 -
Amo10g2687 529 SUPERFAMILY Nucleic acid-binding proteins 269 396 IPR012340 -
Amo10g2687 529 PANTHER REPLICATION FACTOR A 1, RFA1 22 367 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2687 Amo-Chr10 91364467 91367641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2687 11 359 Core DNA Replication Machinery Family AT5G08020 22.951 5.73e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2687 - - adu:107471135 867.455