Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2684 ATGGAGGGATCCATAGGCCTAAGAAAAGGTGCATGGGCTAAGGTGGAAGATGACCTTCTAAGAGCTTGTGTTGAACAATATGGAGAAGGAAAGTGGCACCTAGTTCCTTCTAGAGCGGGGTTGAACAGATGCCGCAAAAGTTGTAGACTGAGATGGTTGAATTATCTGAAACCAAATATAAAGCGTGGAGAGTTCTCTGAAGATGAAGTTGATCTCATGATTAGAATGCACAGACTTTTGGGAAACAGATGGTCCTTAATTGCTGGAAGACTTCCGGGAAGAACGCCAAACGATGTGAAGAATTACTGGAACACCTATGTTCGAAGGAATAATAAGCACACTTCATCATCATCATCAGTACCCTCTCCTTCATCAGTGGTGACGACAGTGAAACGTCATGACCATATTAATCATCAGGTAATAAAACCTCATCCCCGAACTTTCTCGAAAGCATCGCCATGGTTATTATTAAAGAAAACATCTACAAGTGGTTATCATAATAATAACAAGCAGAGGGATGGGGCCAAGGCAGAAGAAGAGTGCACCGATAATAATAATAATAATAATGATAATAATGGTTCTGGTGGTGGATGTGATGATGGGAACACGTGTCGGAACAAGAACGGTGGCAAAGGGGATGAAGAGAAGTTGAACGACGGGTGCTTACTCTCAGTCTCAGGTGCTGAGGAAGAAGAAGAAGAAGAAGACTGGAAGCTGCTTTTACCTGACTTCAATTGGGATGCTCATAATGATGATCACTTCTTGAAGGACGCTTCTGATGCTGACCACGATATGCTTATTAATGTCCATGGTCAAACTTGGAGTGATATCCTTCTTGATATCAATTTGTGGGATCCACAATAA 864 0.4201 MEGSIGLRKGAWAKVEDDLLRACVEQYGEGKWHLVPSRAGLNRCRKSCRLRWLNYLKPNIKRGEFSEDEVDLMIRMHRLLGNRWSLIAGRLPGRTPNDVKNYWNTYVRRNNKHTSSSSSVPSPSSVVTTVKRHDHINHQVIKPHPRTFSKASPWLLLKKTSTSGYHNNNKQRDGAKAEEECTDNNNNNNDNNGSGGGCDDGNTCRNKNGGKGDEEKLNDGCLLSVSGAEEEEEEEDWKLLLPDFNWDAHNDDHFLKDASDADHDMLINVHGQTWSDILLDINLWDPQ* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2684 287 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Amo10g2684 287 CDD SANT 64 107 IPR001005 -
Amo10g2684 287 Gene3D - 9 61 - -
Amo10g2684 287 Gene3D - 63 136 - -
Amo10g2684 287 MobiDBLite consensus disorder prediction 181 201 - -
Amo10g2684 287 CDD SANT 11 56 IPR001005 -
Amo10g2684 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Amo10g2684 287 SMART sant 61 109 IPR001005 -
Amo10g2684 287 SMART sant 8 58 IPR001005 -
Amo10g2684 287 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Amo10g2684 287 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Amo10g2684 287 MobiDBLite consensus disorder prediction 161 201 - -
Amo10g2684 287 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 185 - -
Amo10g2684 287 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Amo10g2684 287 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Amo10g2684 287 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 185 - -
Amo10g2684 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2684 Amo-Chr10 91308987 91314071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2684 2 149 MYB Transcription Factor Family AT1G66370 60.135 2.07e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo10g2684 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2684 - K16166 adu:107471154 567.385