Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2677 ATGGCGTTCCCTCCTTCTCACTCTTTCATCTTCCATCATGATCATCAACAACCACAACATCACCCTCTCCGTACAACTCCTCCTTCAGCCCCCGCCTTCCCCTCTTTCCCGCCTCACCACCACCACTTTCCAGCAGGAGGAGGTGGTGGTAGCGGTGGAGGCTCTTGGATGAAGCGATCCATGTCGTTTTCAGGCATAGACACCACCAAGAACTGTGGCGGCGGCGCCGGCGCTGACGAGTTAGCGCTACTGCACGGAGACGATGAGCTCTCCGACGACGGATCCCAAATCGGGGAGAAGAAGAAGAGGCTCGGCATGGAGCAGGTGAAGGCTCTGGAGAAGAGCTTCGAGGCCGGCAACAAGCTCGACCCCGAGCGCAAAATGCAGCTGGCCAAAGCCCTTGGGCTTCAGCCGCGCCAGATCGCCATTTGGTTCCAGAACCGCCGTGCAAGGTGGAAGACCAAGCAGCTCGAGAAGGAGTATGAGGTCCTCAAGAAGCAGTTTGATGCCGTTAAGGCCGATAACGACTCCCTCAAAACGCAGAATCAGAAGCTCCACGCTGAGCTAGAAGCTCTAAAGGGTAGTAGGGAATGGTGTGAAAATGGAACAATGATTACCCTAAAGAAAGAAAATGAGGGTTCTTGGAGCAACAATGGAAGTGATAATAGCTCAGATATGAACTTGGATCTTTCAAGAACACCAGTGATGAATAGTCCAGTGTCTTCTTCTCATAATAATAATAATAATAATAATAATATAATAATAATAATAATAAAAGTCTTGTTCTACCAAATAATTCTCTTAAGCCAGCAAGCATAA 819 0.4933 MAFPPSHSFIFHHDHQQPQHHPLRTTPPSAPAFPSFPPHHHHFPAGGGGGSGGGSWMKRSMSFSGIDTTKNCGGGAGADELALLHGDDELSDDGSQIGEKKKRLGMEQVKALEKSFEAGNKLDPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFDAVKADNDSLKTQNQKLHAELEALKGSREWCENGTMITLKKENEGSWSNNGSDNSSDMNLDLSRTPVMNSPVSSSHNNNNNNNNIIIIIIKVLFYQIILLSQQA* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2677 272 Coils Coil 147 195 - -
Amo10g2677 272 MobiDBLite consensus disorder prediction 210 244 - -
Amo10g2677 272 CDD homeodomain 100 156 IPR001356 GO:0003677
Amo10g2677 272 Pfam Homeobox associated leucine zipper 155 194 IPR003106 GO:0006355|GO:0043565
Amo10g2677 272 Gene3D - 92 168 - -
Amo10g2677 272 SMART HOX_1 98 159 IPR001356 GO:0003677
Amo10g2677 272 MobiDBLite consensus disorder prediction 24 38 - -
Amo10g2677 272 PRINTS Lambda-repressor HTH signature 126 135 IPR000047 GO:0003677
Amo10g2677 272 PRINTS Lambda-repressor HTH signature 135 151 IPR000047 GO:0003677
Amo10g2677 272 MobiDBLite consensus disorder prediction 1 56 - -
Amo10g2677 272 SUPERFAMILY Homeodomain-like 92 157 IPR009057 -
Amo10g2677 272 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Amo10g2677 272 Pfam Homeodomain 101 153 IPR001356 GO:0003677
Amo10g2677 272 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Amo10g2677 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 246 IPR045224 GO:0003700
Amo10g2677 272 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2677 Amo-Chr10 91106990 91109905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2677 1 227 Homeobox Transcription Factor Family AT5G15150 53.942 1.86e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo10g2677 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2677 K09338 - gmx:100816097 260.766