Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2659 ATGGCGGGAAGTGCAACTAAGAAGGTTACATTTGTTTTCTTGGCTACTTTGGCCATTGTTGTTCGATGCATTGAAGCTGGTGGGAATGTGGTGTTTGATGATCATCTCAGAGAACAAGAGAGGATTGCTTATGAACTTGCCCTCAAAACTTACGTCCCAGACCCTTTGGAAGTTACATTCGAACTCAACCATCATGTTAACTTTGTGTATTTGGCGTCTTTTAGATTCATGAACAAAACTGAATCAAGGAGGAATCTGATGAAGATAAAGAGAAGGAACAGACGTTTTATCTGTGAAGCCACCAACCCCATAGACGGTTGTTGGAGGTGCGATCCCAATTGGGCCAGAAACCGCTTCAGGCTGGCGGAGTGCGCAAAGGGATTCGGAAGAAGAGCCAAGGGAGGCTTAGGCGGCCCAATCTACGTCGTCACTGACGAATCCGACGACGACATGATAAACCCTAGACCCGGAACCCTAAGATATGGAGTCCTCCTGAGGGGACCAGTGTGGATCATATTTGCAAGAAGCATGTTGATCAACTTGAAGCAAGAGTTGATCGTGACCTCCGACAAGACGATCGACGGGCGCGGCGCCAACATTCAGATCAGGGGCGGCGCCGGGCTAACGTTGCAGTTCGTGAACAATGTTATCATTCATGGGATTCGCATCAAGGGAGTGAGGTCCAGATCTGGTGGCATGATAAGGTCAAGTGCAGATCATATTGGTCTGAGGATGAGGAGTGATGGTGATGGCATCACCATCTTTGGGTCAAGCAACGTTTGGATCGATCATATCTCCATGTCTGACTGCGAGGATGGCCTCATCGATGTTGTTGCCGGTTCCACTGGCATCACCATCTCAAATTGCCATATGACCAAACACAACGATGTGATGTTGTTTGGAGCTGATGACAGATTCACAAGGGACAAGATCATGCAAGTGACCGTGGTATTCAACCACTTCGGACAAGGATTGATTCAAAGGATGCCGAGGTGCAGATTCGGATTCTTCCATGTTCTTAACAACGACTACACCCACTGGCTCATGTACGCCATTGGAGGAAGCTCAAACCCAACAATTCTAAGCCAGGGCAACCGCTTCATCGCTCCSAACAACATGGCGGCCAAGGAGGTSACCCACCGCGACTACGCCAGGCCCGAGGAGTGGGCCAACTGGCAGTGGCGCTCGGAGAATGACCTCTTCATGAACAACGCCAGGTTTGTTGAGTCTGGAGCTCCAATTACCAATCTACCCTTCAGGGGGTTCCTCATGACCCCTCGACATGGTTCTCATGCTAACAGACTCACTAGTTATGCTGGTGCTCTTACTTGCGTTGTTGGCAGGCCTTGCTAG 1353 0.4952 MAGSATKKVTFVFLATLAIVVRCIEAGGNVVFDDHLREQERIAYELALKTYVPDPLEVTFELNHHVNFVYLASFRFMNKTESRRNLMKIKRRNRRFICEATNPIDGCWRCDPNWARNRFRLAECAKGFGRRAKGGLGGPIYVVTDESDDDMINPRPGTLRYGVLLRGPVWIIFARSMLINLKQELIVTSDKTIDGRGANIQIRGGAGLTLQFVNNVIIHGIRIKGVRSRSGGMIRSSADHIGLRMRSDGDGITIFGSSNVWIDHISMSDCEDGLIDVVAGSTGITISNCHMTKHNDVMLFGADDRFTRDKIMQVTVVFNHFGQGLIQRMPRCRFGFFHVLNNDYTHWLMYAIGGSSNPTILSQGNRFIAPNNMAAKEVTHRDYARPEEWANWQWRSENDLFMNNARFVESGAPITNLPFRGFLMTPRHGSHANRLTSYAGALTCVVGRPC* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2659 450 Pfam Pectate lyase, N terminus 32 86 IPR007524 GO:0030570
Amo10g2659 450 Pfam Pectate lyase 183 367 IPR002022 -
Amo10g2659 450 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Amo10g2659 450 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Amo10g2659 450 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Amo10g2659 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Amo10g2659 450 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Amo10g2659 450 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Amo10g2659 450 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Amo10g2659 450 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Amo10g2659 450 PANTHER PECTATE LYASE 18-RELATED 6 450 IPR045032 GO:0030570
Amo10g2659 450 Gene3D - 101 443 IPR012334 -
Amo10g2659 450 SUPERFAMILY Pectin lyase-like 91 444 IPR011050 -
Amo10g2659 450 SMART amb_all 176 373 IPR002022 -
Amo10g2659 450 PANTHER PECTATE LYASE 6 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2659 Amo-Chr10 90769419 90773246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2659 11 450 Polysaccharide Lyase AT1G14420 54.102 3.41e-175 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2659 K01728 - gmx:100810615 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3300 20 140887564 140891630 Amo10g2659 10 90769419 90773246 hybridization