Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2629 ATGGATGTGGATAATAATGATAATAGTGTTGGTGCCATGGTTAGTAGTAGGAAGAAGAAGAAAAAGAATGGGTCAATAAGTTCAATTTTCATGCATGCAGATACCAAAGACTGGTTTTTCATGCTCTTTGGTTTGTTGGGGGCAATTGGAGATGGATTAACCACACCTRTGGTCTTGTTCATCACTAGCAAGATGATGAACAACCTTGGAAGTTTTTCTAATCTTGATGGAGGTGGTGCTTTCACTCAGAACATAAACAAGAATGCAGTGGCTTTGTTATATTTGGCATGTGGGTCTTTTGTTGCTTGCTTCTTGGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCAACAAGAATGAGAGGCAGATATTTAAAGGCAGTACTAAGACAAGAAGTGGCATACTTTGATTTGCATGTTACAAGCACTTCAGAGGTCATCACCAGTGTCTCCAATGATAGCCTTGTAATTCAAGATTGTCTTAGTGAAAAGGTTCCAAATTTCTTGATGAATGCATCAATGTTTATTGGGAGCTACATAGTGGCATTTGCATTACTATGGAGACTAGCAATAGTGGGGTTCCCATTTGTGGTGTTGCTAGTGATCCCAGGCTTAATGTATGGAAGAACATTAATGGGGTTAGCAAGAAAAATAAGAGAAGAGTATAATCAAGCAGGGACAGTGGCAGAGCAAGCAATATCATCAATAAGAACAGTGTATTCTTTTGTGGGAGAGAACAAGACAATAGGTGCTTTCTCTGATGCTCTACAAGGTTCTGTTAGGTTGGGTTTGAAACAAGGGTTGGCTAAAGGGTTAGCWATTGGAAGCAATGGTGTTGTCTTTGCAATTTGGTCTTTTATGTCTTATTATGGTAGCAGGTTGGTTATGTACCATGCTGCTCAAGGTGGCACTGTTTTTGCTGTTGGTGCTGCTATTGCTCTTGGTGGATTGGCGTTAGGTGCCGGTCTATCCAATGTTAAGTACTTCTCAGAAGCAATTACTGCAGGAGAACGAATCATGGAGGTTATAAAACGAATTCCAAAGATTGATTCGGACAACATGGTAGGAGAGATTCTCGAAAACGTCTTAGGAGAAGTCGAATTGGATCATGTTGAATTCGCATACCCGTCGAGGCCGGACAACATGATACTATCCGACTTTTCCCTGAAGATTCCGGCCGGGAAAACTGTAGCCCTAGTGGGAGGGTCCGGGTCGGGGAAATCGACGGTGATATCATTGTTGCAAAGGTTCTATGACCCAATAGGAGGTGAGATAAGGCTTGATGGGGTGCCAATTATGAAGATGCAATTAAAATGGCTAAGATCTCAAATGGGTTTGGTTAGTCAAGAGCCAGCACTATTTGCAACAAGTATAAAAGAGAATATTCTGTTTGGGAGAGAAGATGCATCTGAGCAAGAGATTGTGGAAGCTGCAAAAGCCTCCAATGCTCATAATTTCATCTCACAATTGCCACAGGGATATGATACCCAGGTTGGGGAGAGAGGAGTTCAAATGTCAGGAGGACAAAAACAAAGAATCGCCATCGCAAGAGCAATAATCAAGAAACCAAGAATCCTCCTTCTGGACGAAGCAACAAGCGCACTCGACTCCGAATCTGAGCGCGTTGTTCAAGAAGCCCTCGACAAAGCCGCCGTTGGCCGCACCACCGTGATCATTGCCCACCGCCTTTCCACCGTTCAGAATGCTGACCTCATTGCCGTCGTTCAGAACGGCAAGGTCGTGGAAATAGGGCCCCACCAAACCCTAATTCAAAACGATGCCGGAATTTACACTTCCCTCGTTCGCCTCCAAGCGTCAAAGAATAATAATGAACAAGACGACACTGTCGTTTTGCCTCCTCCTACTCATCCGTCGTCCATTTCCAACAAGGATATTCATAACACAAGCAGTCGAAGGCTCTCGCAAGTCAGCCGATCCAGTTCAGCAAACTCCGTTGCCCGCGTGGCTTCTTGTGCCGGTGATGATCATGACGTAGAAGAAATAGTCGAAGATAACAACTTTGCTGTTCCTTCATTTGGCAGGTTGTTAGCTCTAAACCTTCCGGAGTGGAAGCAAGCATGTTTGGGATGTATGAGTGCAGTGCTATTTGGTGCAGTTCAACCGATTTATGCATTCTCMATGGGGTCAATGATATCCGTTTATTTTCTGACGGACCATGATGAGATTAAGAGGAAGACTATGATCTACGCACTTTGTTTTCTAGGGTTGGCTGTGTTCTCTCTAATTGTGAATGTGTTGCAGCATTATAACTTTGCTTACATGGGTGAGTACTTGACAAAGAGGGTTAGGGAGAGGATGCCTTCAAAGATTCTCACTTTTGAAGTAGGCTGGTTTGACCAGGATGAGAATTCAACGGGTGCAGTTTGTTCTAGACTTGCCAAAGAAGCAAATGTGGTAAGGTCCTTAGTGGGAGACAGAATGGCCCTAGTGGTTCAAACAATCTCAGCGGTTCTAATAGCATGCACCATGGGCTTGATTATAGCATGGAGGCTCGCCCTTGTTATGATAGCCGTTCAACCAATCATCATAGCATGTTTCTACACAAGGCGTGTCCTTTTACAAAGCATGTCAAGCAAGGCCATCAAGGCCCAAAGCGAAACCAGCAAGATAGCCGCCGAGGCCGTCTCCAACCTCAGAACCATAACTGCATTCTCTTCCCAAGACCGGATGCTCAAGATGCTCGAGAAGGCCCAACAGGGTCCAAGACGTGAGAGCATCCGGCAATCTTGGTATGCCGGAATTGGGCTTGCTTGTGCCCAAAGCCTCACGTCTTGTACATGGGCCTTGGACTTTTGGTACGGTGGAAAACTTATAGCCCACGGATACATAACGTCCAAGGCGCTGTTTGAGACCTTCATGATCTTGGTGAGCACGGGTAGGGTTATTGCCGATGCTGGTAGCATGACTAGTGACCTTGCTAAAGGTTCAGATGCTGTGGCCTCTGTTTTTGCCATCTTAGACAGGTACACTAAGATTGAGCCCGATGACCCAGAAGGGTACAAGGCGGAAAAATTAACGGGCCAGATGGAACTAAAAGATGTCCATTTCGCATACCCAGCTAGGCCCAACGTGATGATATTCGAAGGGTTCTCAATGCAAATTGATGCAGGGAAATCAACAGCACTAGTGGGCCAAAGTGGTTCAGGCAAATCAACAATATTGGGTCTAATTGAGAGGTTCTATGAGCCAATGAAAGGACAAGTGATCATAGATGGTAGAGACATTAAATCATATAACCTAAGGTCACTAAGGAACCACATTGCACTAGTGAGCCAAGAGCCAACTCTATTTGGTGGCACCATAAAGGAGAACATTGCTTATGGAGCTTGTGAAAATGATGACAAAGTTGTGAGTGAAAGTGAGATTATAGAAGCAGCAAGGGTAGCAAATGCACATGAATTTATTGCAAGTTTGAAAGATGGGTATGACACATATTGTGGTGATAGAGGGGTTCAATTGTCAGGGGGTCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTCTGAAAAATCCAGAAGTTTTGCTATTGGATGAGGCAACAAGTGCACTTGATAGCCAATCAGAGAAGCTAGTGCAAGGTGCATTGGAGAGGGTTATGGTTGGAAGAACAAGTGTGGTTGTTGCTCATAGGTTAAGCACAATTCAGAATTGTGATGTGATTGCTGTTTTGGATAAAGGGAAGCTTGTGGAAAAAGGGACTCATTCATCTTTGTTGGGTAAAGGCCCAACTGGTGCTTATTACTCTCTTGTGAGTCTGCAACAAACAAGAGCAACCAACACTAATAATAGTAATAATAATGTTGGTGAAATTAGCTAG 3840 0.4406 MDVDNNDNSVGAMVSSRKKKKKNGSISSIFMHADTKDWFFMLFGLLGAIGDGLTTPXVLFITSKMMNNLGSFSNLDGGGAFTQNINKNAVALLYLACGSFVACFLEGYCWTRTGERQATRMRGRYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDCLSEKVPNFLMNASMFIGSYIVAFALLWRLAIVGFPFVVLLVIPGLMYGRTLMGLARKIREEYNQAGTVAEQAISSIRTVYSFVGENKTIGAFSDALQGSVRLGLKQGLAKGLAIGSNGVVFAIWSFMSYYGSRLVMYHAAQGGTVFAVGAAIALGGLALGAGLSNVKYFSEAITAGERIMEVIKRIPKIDSDNMVGEILENVLGEVELDHVEFAYPSRPDNMILSDFSLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIGGEIRLDGVPIMKMQLKWLRSQMGLVSQEPALFATSIKENILFGREDASEQEIVEAAKASNAHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTVIIAHRLSTVQNADLIAVVQNGKVVEIGPHQTLIQNDAGIYTSLVRLQASKNNNEQDDTVVLPPPTHPSSISNKDIHNTSSRRLSQVSRSSSANSVARVASCAGDDHDVEEIVEDNNFAVPSFGRLLALNLPEWKQACLGCMSAVLFGAVQPIYAFSMGSMISVYFLTDHDEIKRKTMIYALCFLGLAVFSLIVNVLQHYNFAYMGEYLTKRVRERMPSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVLIACTMGLIIAWRLALVMIAVQPIIIACFYTRRVLLQSMSSKAIKAQSETSKIAAEAVSNLRTITAFSSQDRMLKMLEKAQQGPRRESIRQSWYAGIGLACAQSLTSCTWALDFWYGGKLIAHGYITSKALFETFMILVSTGRVIADAGSMTSDLAKGSDAVASVFAILDRYTKIEPDDPEGYKAEKLTGQMELKDVHFAYPARPNVMIFEGFSMQIDAGKSTALVGQSGSGKSTILGLIERFYEPMKGQVIIDGRDIKSYNLRSLRNHIALVSQEPTLFGGTIKENIAYGACENDDKVVSESEIIEAARVANAHEFIASLKDGYDTYCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQGALERVMVGRTSVVVAHRLSTIQNCDVIAVLDKGKLVEKGTHSSLLGKGPTGAYYSLVSLQQTRATNTNNSNNNVGEIS* 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2629 1279 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524
Amo10g2629 1279 ProSitePatterns ABC transporters family signature. 1161 1175 IPR017871 GO:0005524
Amo10g2629 1279 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 27 1267 - -
Amo10g2629 1279 CDD ABC_6TM_Pgp_ABCB1_D2_like 684 1000 - -
Amo10g2629 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 332 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo10g2629 1279 Gene3D ABC transporter type 1, transmembrane domain 28 986 IPR036640 GO:0005524|GO:0016021
Amo10g2629 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1008 1261 IPR027417 -
Amo10g2629 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 696 982 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo10g2629 1279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 603 IPR003439 GO:0005524
Amo10g2629 1279 SUPERFAMILY ABC transporter transmembrane region 30 351 IPR036640 GO:0005524|GO:0016021
Amo10g2629 1279 CDD ABC_MTABC3_MDL1_MDL2 367 605 - -
Amo10g2629 1279 CDD ABC_MTABC3_MDL1_MDL2 1018 1261 - -
Amo10g2629 1279 Gene3D - 1007 1273 IPR027417 -
Amo10g2629 1279 MobiDBLite consensus disorder prediction 611 638 - -
Amo10g2629 1279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1017 1258 IPR003439 GO:0005524
Amo10g2629 1279 Pfam ABC transporter 1037 1189 IPR003439 GO:0005524
Amo10g2629 1279 SUPERFAMILY ABC transporter transmembrane region 682 1002 IPR036640 GO:0005524|GO:0016021
Amo10g2629 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 605 IPR027417 -
Amo10g2629 1279 Pfam ABC transporter 385 534 IPR003439 GO:0005524
Amo10g2629 1279 Gene3D - 357 606 IPR027417 -
Amo10g2629 1279 CDD ABC_6TM_Pgp_ABCB1_D1_like 41 340 - -
Amo10g2629 1279 SMART AAA_5 394 586 IPR003593 -
Amo10g2629 1279 SMART AAA_5 1044 1241 IPR003593 -
Amo10g2629 1279 Pfam ABC transporter transmembrane region 41 309 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo10g2629 1279 Pfam ABC transporter transmembrane region 695 964 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo10g2629 1279 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 27 1267 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2629 Amo-Chr10 89818561 89831534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2629 7 1277 Calmodulin-binding Proteins AT2G36910 44.015 0.0 1061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3237 20 139211593 139225802 Amo10g2629 10 89818561 89831534 hybridization