Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2628 ATGTTTCAGGATCAGAGAGAAAAATATGACTTGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAGAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGGCACAACAATTTGATATTTGGATTTAACACTTTCTTGCCTAAGGGATATGAGATAACACTTGATGAGGAAGAGGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCGATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAAGAGCACAAGGACATTGGTGAGGTTTATAACGAGGTTGCTACCCTTTTCAAGGACCATAGAGATTTGCTTGATGAGTTCACTAGATTCTTACCAGATACTTCTCAAGCACCTTCTGCACAGCATGCTCCATATGGTCGAAGTTCATTGCAACGATTCAATGAGCGGAGTTCTACAGCACCCATGATGCGACAAGTGCATGTAGACAAGGTACAACGTTATCGACGAGACAGGATTCTTGGCTCTCATGATCGTGATCAGAGCGTTGATCGAGCTGATCTGGATGATGACAAAATAAACATGCACAAGGAGCAGAGGAAACGTGAGAATAGGGATAGAAGAGTCCGTGATCATGATGAGAGAGAACAAGATCTTGATAATGGCAGGGATTTGAACTTGCAACGCTTTCAAGACAAAAAGAAATCTGTCAAGAAGGCGGAAGGGTTTGCCATGGCTTCTGACTTTCCTTCATATGATGACAAAGATGCGTTAAAGACCATGTATGGTCAAGCATTCAGCTTCTGCGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGACTACCAAGCATTCTTGAAGTGCCTTCACATTTTCAGCAATGGGATAATAAAAAGGAACGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAACACTCCGATCTATTGCATGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCCCTGTCTACCGATGGTCATATATCAAGATCATCAAAGTTGGAGGACAAAGATAAAGAGCACAAGCGTGAGATGGATGGACCTAAAGAGAAAGAAAGATACAGTAAATACTCGGGAAAATCCATTCAAGAACTTGATCTTAGTGATTGCAAACGTTGTACTCCAAGCTACAGGCTGCTGCCTGCAGATTATCCAATTCCTGTGGCTAGTCAGAGATCTGAACTTGGAGCTCAAGTATTGAATGACCATTGGGTATCTGTGACTTCAGGAAGCGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTATTCAGATGCGAAGATGACAGATTTGAAATGGACATGCTATTAGAGTCAGTGAGTTCTGCTGCGAAACGTGTAGAGGAGTTGTCTAATAGCATTAATGAGAATAAGATGGAGAACCTGGGCCGGATTGAAGATCAATTCACTGCTTTAAATTTAAGGTGTATTGAACGTTTGTACGGTGACCATGGTCTCGATGTGATAGACATTTTGCGTAAAAATCCAACTCATGCTCTGCCTGTAATATTGACTCGACTTAAGCAGAAACAAGAGGAGTGGACTAAGTGTCGTGCAGATTTCAATAAAGTTTGGGCTGAAATTTATGCTAAGAACCACTACAAGTCACTCGATCACCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGCACACGAAATATTTGGTGACTGAGATTAAAGAAATTAAAGAGAAGCAGCAAAAAGAGGATGATATTCTTCAGTCCATTGCTGCTGGAAGTAAACAGCCTCTAACTCCACATCTTGAGTTTGAATATCCTGATGCTGCAATTCATGAAGACTTGTATAAACTTATTCGGTATTCATGTGAGGAGATTTACTCTAGTAGGGAGTTGATGAATAAAACTATGAGGCTCTGGTGTACCTTTTTGGAGCCGATGCTTGGTGTTCCTTCCCGATCACATGGGACAGAAAAGGTGGAAGAGAGGAAAGCAGGGCCTAATGTTGGCAATGCAGGCAATGGAAGTCCTCATGGAGACTCCATTTCAATTAATTCAAGGTTACCAAAATCTGACAAGAATGAAGCGGATGGTAGAGTACCTGATGTAAAGAATGTTCACCGGACTAGTGCTGCAGCTAATGATAAAGAAAATGGATCTGTTGGTCGTGAAAATTTCTGTAGAGATGAACCCCCACTGGATAAAGGGCAGACAAATATAGAGTGCAACAATAAAGTCTCTGGGATTAATAAACAATTTTCTGCTGATGAACAAGGAGCTAAAAACAATGCATTAATTTCAGTTAGAGGAGAAAAATTAGAAGATAATCCTAGCAGGAACAACGAAGAATTGACTCCAGGCGCTGTCACTACTCCTTCTCGACCTACTGACGCTGACGAATCCGTACCTAAACCTCAGGAAGTAAATGCTACTTTGGTAGAGGGGTCTGATGTTACAGCTCCAGTTACAGTGGCCGATGGGGTACCAACTCAGAGCAGTAAAGTTAGAAGCCATGAAGAATCTGCTGGGCCTTGTAAAACTGAGAAGGAAGAGGGCGAGTTATCACCAAATGGTGATTCGGAGGAGGATAACTTTGTTGCTTATGGAGATTCAAATGTGCAGTCAATGTCCAAGTCAAAGCACACTATTGAGAGAAGAAAATATCAGTCCAGAATTGGAGAGGATGAGTCCTGCCCAGAGGCTGGAGGCGATAATGATGCAGATGCAGATGATGAGGACAGTGAAAATGTGTCTGAAGCTGGTGAAGATGTCTCGGGCAGTGAATCTGCTGGTGATGAATGCTTCCGAGAGGACCACGAGGATGAGGAAGATATAGAGCATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCAGAGGGTACATGTGATGCACAATCTGCTGGAGGAGATGGTTCATCTCAGCCACATTCAGAAAGGTTTCTTTCGTCTGTGAAACCTCTGACAAAGCATGTTTCAGCAGTGTCATATGTTGAAGACATGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTATGCACTTTTTAGGCTTCATCAACTTCTTTATGAAAGGATCTTGTCTGCAAAAACCAATGCCACGAATTCAGAAATGAAATGGAAAGCCAAGGATGCCAGCTCCCCAGATCCTTATTTGAAATTTATGGATGCATTGTACAGCCTTCTTGATGGATCTTTTGAGAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGCAACCAGTCATATGTGTTATTCACATTGGACAAATTAATATATAAACTAGTTAGACATCTTCAAAATGTTGCAACAGATGATATGGCCAATAAGCTGCTCCAATTGTATGAGTACGAAAAGTCTCGGAAACCTGGGAAACTAAACGATTCAGTATATCATGCAAATGCACATGTTATACTTAATGAGGACAATATATATCGATTGCAATGTTCCTCACCACCCTCTCGGCTATCCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGATGTTTGCTGTTTCTATTGATCCAAATTTTTCTTTTTACCTTCACAATGATTTTCTCTCCGTCCTTCCTTCTAAAAAGGAACCCCATGGCATTTTACTTCAAAGAAACAAACGCAAATTTGGAGATATTGATGAGCTTTCTGGAATAACTTCTGCTATGGAAGGTGTCAAGCTAATTAATGGCTTGGAATGTAAGATAGCTTGCAGCTCGTCCAAGGGTGAATTACATTGA 3819 0.409 MFQDQREKYDLFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEEEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYNEVATLFKDHRDLLDEFTRFLPDTSQAPSAQHAPYGRSSLQRFNERSSTAPMMRQVHVDKVQRYRRDRILGSHDRDQSVDRADLDDDKINMHKEQRKRENRDRRVRDHDEREQDLDNGRDLNLQRFQDKKKSVKKAEGFAMASDFPSYDDKDALKTMYGQAFSFCEKVKEKLSSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLLHEFNDFLERCENIDGFLAGVMSKKSLSTDGHISRSSKLEDKDKEHKREMDGPKEKERYSKYSGKSIQELDLSDCKRCTPSYRLLPADYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFEMDMLLESVSSAAKRVEELSNSINENKMENLGRIEDQFTALNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWTKCRADFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLHTKYLVTEIKEIKEKQQKEDDILQSIAAGSKQPLTPHLEFEYPDAAIHEDLYKLIRYSCEEIYSSRELMNKTMRLWCTFLEPMLGVPSRSHGTEKVEERKAGPNVGNAGNGSPHGDSISINSRLPKSDKNEADGRVPDVKNVHRTSAAANDKENGSVGRENFCRDEPPLDKGQTNIECNNKVSGINKQFSADEQGAKNNALISVRGEKLEDNPSRNNEELTPGAVTTPSRPTDADESVPKPQEVNATLVEGSDVTAPVTVADGVPTQSSKVRSHEESAGPCKTEKEEGELSPNGDSEEDNFVAYGDSNVQSMSKSKHTIERRKYQSRIGEDESCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEDEEDIEHDDVDGKAESEGEAEGTCDAQSAGGDGSSQPHSERFLSSVKPLTKHVSAVSYVEDMKDSRVFYGNDDFYALFRLHQLLYERILSAKTNATNSEMKWKAKDASSPDPYLKFMDALYSLLDGSFENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRHLQNVATDDMANKLLQLYEYEKSRKPGKLNDSVYHANAHVILNEDNIYRLQCSSPPSRLSIQLMDNMNEKPEMFAVSIDPNFSFYLHNDFLSVLPSKKEPHGILLQRNKRKFGDIDELSGITSAMEGVKLINGLECKIACSSSKGELH* 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2628 1272 MobiDBLite consensus disorder prediction 675 765 - -
Amo10g2628 1272 SUPERFAMILY PAH2 domain 65 137 IPR036600 GO:0006355
Amo10g2628 1272 MobiDBLite consensus disorder prediction 745 759 - -
Amo10g2628 1272 Pfam Paired amphipathic helix repeat 91 135 IPR003822 GO:0006355
Amo10g2628 1272 Pfam Paired amphipathic helix repeat 7 51 IPR003822 GO:0006355
Amo10g2628 1272 Pfam Paired amphipathic helix repeat 290 334 IPR003822 GO:0006355
Amo10g2628 1272 ProSiteProfiles PAH domain profile. 1 54 IPR003822 GO:0006355
Amo10g2628 1272 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1268 - -
Amo10g2628 1272 MobiDBLite consensus disorder prediction 354 389 - -
Amo10g2628 1272 MobiDBLite consensus disorder prediction 172 236 - -
Amo10g2628 1272 Pfam Sin3 family co-repressor 402 496 IPR013194 -
Amo10g2628 1272 MobiDBLite consensus disorder prediction 360 389 - -
Amo10g2628 1272 MobiDBLite consensus disorder prediction 804 821 - -
Amo10g2628 1272 Gene3D Paired amphipathic helix 1 52 IPR036600 GO:0006355
Amo10g2628 1272 Gene3D Paired amphipathic helix 265 339 IPR036600 GO:0006355
Amo10g2628 1272 MobiDBLite consensus disorder prediction 923 943 - -
Amo10g2628 1272 MobiDBLite consensus disorder prediction 138 236 - -
Amo10g2628 1272 MobiDBLite consensus disorder prediction 959 974 - -
Amo10g2628 1272 SUPERFAMILY PAH2 domain 270 337 IPR036600 GO:0006355
Amo10g2628 1272 MobiDBLite consensus disorder prediction 138 165 - -
Amo10g2628 1272 ProSiteProfiles PAH domain profile. 268 337 IPR003822 GO:0006355
Amo10g2628 1272 Gene3D Paired amphipathic helix 67 139 IPR036600 GO:0006355
Amo10g2628 1272 MobiDBLite consensus disorder prediction 698 713 - -
Amo10g2628 1272 SUPERFAMILY PAH2 domain 2 53 IPR036600 GO:0006355
Amo10g2628 1272 MobiDBLite consensus disorder prediction 714 728 - -
Amo10g2628 1272 MobiDBLite consensus disorder prediction 903 922 - -
Amo10g2628 1272 Pfam C-terminal domain of Sin3a protein 1032 1268 IPR031693 -
Amo10g2628 1272 PANTHER SIN3B-RELATED 1 1268 IPR039774 GO:0003714
Amo10g2628 1272 SMART hdac_interact2seq4b 400 500 IPR013194 -
Amo10g2628 1272 MobiDBLite consensus disorder prediction 863 878 - -
Amo10g2628 1272 MobiDBLite consensus disorder prediction 794 1005 - -
Amo10g2628 1272 ProSiteProfiles PAH domain profile. 68 138 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2628 Amo-Chr10 89766439 89775188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2628 2 87 WRKY Transcription Factor Family AT4G12020 47.674 3.69e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo10g2628 Sin3a_C 3.3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2628 K11644 - gmx:100807181 2056.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3236 20 139162286 139177268 Amo10g2628 10 89766439 89775188 hybridization