Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2566 ATGAGAGCCAAAGTTCGTTTCAAATTAAGAACACAAAAACTTTGGTGTATACATCATACATGTATATATATAGAGAGGCCTATAGTATATACCATATTTAATTTGGTGCAGATCTTCGAAGAAGTTGCGCAAATCTGCACCAAGAAAAAATTAATGGAGTCTATGTTGTTGTCGTCAATCACAGCATTACTTCTGTTACTGCTCTCTTGCTTCACATTCACTTCTACAGATGCCTATGATGCACTTGATCCAACCGGTAACATAACGATCAAATGGGACGTCATTAGCTGGACTCCAGATGGCTATGTTGCTGTGGTATCAATGTACAATTTCCAACAGTATCGCCATATTCAGGCGCCGGGGTGGTCGTTAGGGTGGTCGTGGGCCAAGAAAGAAGTAATATGGAACATGATGGGAGGGCAGACCACAGAGCAAGGAGACTGCTCAAAGTTCAAAGCAGGCCAACCACATTGCTGTAAAAAGGACCCTCTAGTCGTTGACTTGCTCCCGGGGACTCCTTACAACCAACAGATCGCCAATTGCTGCAAAGGAGGTGTCCTGAGTTCCTGGGCTCAGGACCCCACCAATGCTGTTAGCTCATTCCAGGTCAGCGTTGGTTCGGCCGGAACAACTAACAGAACGGTCAAGTTGCCGCGAAACTTTACCCTCAAGGCACCTGGTCCTGGATACACTTGTGGCCCTGCAAAGATTGTTAGGCCAACTAAATTTGTTACTAGTGACAAAAGGAGAACCACCCAAGCCTTAATGACTTGGAATGTTACCTGCACATACTCTCAATTCCTGGCTCAAAAGACACCAACTTGTTGTGTTTCCCTCTCATCCTTCTACAATGACACAATAGTAAACTGTCCAACTTGCACCTGCGGCTGCCGGAACAAAACAGCGCCCGGAAGCTGCGTAGATCCAGACTCTACACATTTAGCTTCAGTTGTATCAGGGAAGCCTACGGATACGCCTCTTGTCCAGTGCTCCAGCCACATGTGTCCGATTCGAGTGCATTGGCATGTGAAGCTAAATTACAAGGAGTACTGGAGGATCAAGATCACAATCACAAATTTCAACTACAGAATGAACTACACACAATGGAACCTTGTCGTGCAGCACCCGAATTTTGATAATCTAACTGAGTACTTCAGCTTTAATTACAAGCCACTAATGCCTTATGAAGGCTTAAATGATACTGCTATGCTATGGGGAGTGAAGTTCTACAATGATTTTCTATCTTCAGCTGGACCCCTTGGTAATGTGCAATCAGAACTCTTGTTTAAAAAGGACAAAGAAACCTTCACTTTTGATAAGGGATGGGCTTTCCCAAGAAGGATCTATTTCAATGGAGATAATTGTGTTATGCCTCCTCCTGATGCATATCCTTGGCTTCCAAATTCAAGTTCAAGACTAGTTTTCTCTTTACTAGGCACTCTCATCATAGCCATTTTAGCTTCTATAATCTCATTGAATTAG 1482 0.4372 MRAKVRFKLRTQKLWCIHHTCIYIERPIVYTIFNLVQIFEEVAQICTKKKLMESMLLSSITALLLLLLSCFTFTSTDAYDALDPTGNITIKWDVISWTPDGYVAVVSMYNFQQYRHIQAPGWSLGWSWAKKEVIWNMMGGQTTEQGDCSKFKAGQPHCCKKDPLVVDLLPGTPYNQQIANCCKGGVLSSWAQDPTNAVSSFQVSVGSAGTTNRTVKLPRNFTLKAPGPGYTCGPAKIVRPTKFVTSDKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCRNKTAPGSCVDPDSTHLASVVSGKPTDTPLVQCSSHMCPIRVHWHVKLNYKEYWRIKITITNFNYRMNYTQWNLVVQHPNFDNLTEYFSFNYKPLMPYEGLNDTAMLWGVKFYNDFLSSAGPLGNVQSELLFKKDKETFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNSSSRLVFSLLGTLIIAILASIISLN* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2566 493 PANTHER PROTEIN COBRA 55 489 IPR006918 GO:0010215|GO:0031225
Amo10g2566 493 Pfam COBRA-like protein 102 265 IPR006918 GO:0010215|GO:0031225
Amo10g2566 493 PANTHER COBRA-LIKE PROTEIN 55 489 - -
Amo10g2566 493 PIRSF COBRA 48 493 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2566 Amo-Chr10 88485281 88488403 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2566 64 486 COBRA Gene Family AT3G02210 72.326 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2566 - - gmx:100815779 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4082 01 115521434 115524704 Amo10g2566 10 88485281 88488403 PCT
Amo10g2566 10 88485281 88488403 Amo01g4082 01 115521434 115524704 PCT