LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo10g2563	ATGGCAAAACCTATACCCAAAATTGGTTCGCGTAAAAATGGACGTATTGGTTCACGTAAACATGCTCGTAAAATACCAAAGGGCGTTATTCATGTTCAAGCTAATTTCAACAATACCATTGTCATTGTTACCAATGTATGGGGTCGGGTAATTTCGAGGTCCTCCGCAGGTACTTGTGGATTCAAAGGTACACGAAGGGGAACACCATTTGCCGCCCAAACCGCAGCAGGAAATATTATTCGAACAATAGCGAATCAAGGCATGCAACGAGCTGAAGTCATGATAAAGGGTCCCGGTCTCGGAAGAGATACGGTATTAAGAACTATTCGTAGAAGTGGCATACTCTTAAATTTTATACGGGATGTAACCCCTATGCCACATAATGGGTGTAGGTCCCCTAAAAAATGA	408	0.4265	MAKPIPKIGSRKNGRIGSRKHARKIPKGVIHVQANFNNTIVIVTNVWGRVISRSSAGTCGFKGTRRGTPFAAQTAAGNIIRTIANQGMQRAEVMIKGPGLGRDTVLRTIRRSGILLNFIRDVTPMPHNGCRSPKK*	136

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo10g2563	135	Gene3D	Ribosomal protein S11	13	135	IPR036967	GO:0003735\|GO:0005840\|GO:0006412
	Amo10g2563	135	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	7	135	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Amo10g2563	135	PANTHER	30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC	1	135	-	-
	Amo10g2563	135	SUPERFAMILY	Translational machinery components	23	135	-	-
	Amo10g2563	135	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	1	135	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Amo10g2563	135	MobiDBLite	consensus disorder prediction	1	22	-	-
	Amo10g2563	135	ProSitePatterns	Ribosomal protein S11 signature.	106	128	IPR018102	-
	Amo10g2563	135	Pfam	Ribosomal protein S11	28	135	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Amo10g2563	135	Hamap	30S ribosomal protein S11 [rpsK].	11	135	IPR001971	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo10g2563	Amo-Chr10	88463144	88463551	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo10g2563	28	128	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	33.636	4.72e-12	57.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo10g2563	K02948		-	gmx:3989330	232.646