Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2561 ATGGAAAGTAGCAGCAACAACCAGTGGAGTGCTGAGGAAGCCATTGGTGGCAATGCCCAAGCTCTTCAAGCACTCAGAGAAATCATCATCTTCCCGCGCCTATTTTCTCGACAAGCGCAGAGCCTTGGCCTCAAAACGAGTTTGGTTCGAGCAGTGGTTCGGGAATGTGGGGCGCATTTGAAAATTATTAGTCCGCACATGGTGCACAGAGCACATGCCGGTGAAAGTGAGAAAATTCTCCGAGAGGCTTTTGCTGAGGCAGCATCTCAAGTAGCTTTGGGCAAGTCATCAGTTATCTTTATAGATGAAATAGATGCACTCTGTCCCCGTCGAGATTCTAAAAGGGAGCAAGATGTCCGAGTTGCCTCACAACTCTTTACACTCATGGACTCTAATAAACCCACGTCTTCTACAGCAGGAGTCGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCCGCTCTAAGAAGATCCGGACGTTTTGATGCTGAAATTGAAGTTACTGTTCCAAATGAAGAAGATCGCTTTCAAATTCTTAAGCTGTATACAAAAAAGATTCCATTGGATCCCAATGTTAACATAAAAATCATTGCTGCATCATGCAATGGATATGTTGGAGCTGATTTGGAGGCATTGTGTCGTGAAGCTACCATGTTTGCAATTAAAAGGTCAAATACAAATGAAGATGCTATTAATTTCAGTTTAACAATGGAAGATTGGCAAAACGCAAGGTCCATTGTTGGTCCAAGTATAACAAGAGGTGTTACTGTTGAAGTTCCCAAAGTGACTTGGGAAGACATTGGGGGATTAAAAGATTTGAAGAAAAAACTTCAGCAAGCTGTCGAATGGCCTATTAAGCATTCTGATGCATTTTCAAGATTGGGAATATCTCCCGTACGTGGAATTCTTCTCCATGGACCTCCAGGATGCTCAAAAACAACCCTTGCTAAAGCTGCTGCTCATGCTGCCCAAGCTTCTTTCTTTTCTTTGAGTGGTGCAGAATTGTATTCAATGTATGTTGGAGAGGGGGAAGCTCTGCTCCGTAACACATTTCAGAGAGCCCGACTCGCGGCACCCAGTATAATATTCTTTGATGAGGCTGATGTTGTAGCTACAAAACGAGGTGATAGTTCAAGCAATAGTGCGACAGTTGGTGAGAGGCTTTTATCCACTTTGTTGACTGAGATTGATGGCTTAGAAGAAGCTAAAGGAATTCTTGTTCTGGCAGCAACAAATCGCCCTTACGCGATTGACGCTGCACTCATGCGTCCAGGACGTTTTGATCTGGTTCTTTATGTGCCACCGCCTGATTTGGAGGCTCGATATGAGATACTTTGTGTCCATACGCGTAATATGAAAACAGCGAGTGACGTCAATCTCAGACTACTAGCAGAAGACACTGAACTCTTTACAGGAGCTGAACTGGAGGGGTTATGCAGGGAAGCTGGAATTGTGGCTCTAAGGGAAGACATATCCGCCACCGTTGTATGCGATCGTCATTTCCAGATAGTGAAAGATTCTGTAAACCCAGCACTAACAAAAGCTGAAATTGATTCATACTCATCTTTTATGAAGACCTCATCTCAAGCTTTTCCTAAACATTTTGATTCAGATATGGAATTAGATAGGAGCAAAAAGAATGGGTTCAATCCTATGTCTTTGGTTAAAATTAGTGTTGCCAGTTTTGTATTACTTGCTGCTGCTAAATACTATAACATAGGTGGAGACCAAATTGGACCTCATACACCAATGACCTGA 1764 0.4308 MESSSNNQWSAEEAIGGNAQALQALREIIIFPRLFSRQAQSLGLKTSLVRAVVRECGAHLKIISPHMVHRAHAGESEKILREAFAEAASQVALGKSSVIFIDEIDALCPRRDSKREQDVRVASQLFTLMDSNKPTSSTAGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRFQILKLYTKKIPLDPNVNIKIIAASCNGYVGADLEALCREATMFAIKRSNTNEDAINFSLTMEDWQNARSIVGPSITRGVTVEVPKVTWEDIGGLKDLKKKLQQAVEWPIKHSDAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRNTFQRARLAAPSIIFFDEADVVATKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILCVHTRNMKTASDVNLRLLAEDTELFTGAELEGLCREAGIVALREDISATVVCDRHFQIVKDSVNPALTKAEIDSYSSFMKTSSQAFPKHFDSDMELDRSKKNGFNPMSLVKISVASFVLLAAAKYYNIGGDQIGPHTPMT* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2561 587 Gene3D - 2 170 IPR027417 -
Amo10g2561 587 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B 18 508 - -
Amo10g2561 587 CDD AAA 45 169 - -
Amo10g2561 587 Pfam AAA+ lid domain 193 241 IPR041569 -
Amo10g2561 587 Pfam AAA+ lid domain 459 504 IPR041569 -
Amo10g2561 587 ProSitePatterns AAA-protein family signature. 407 425 IPR003960 GO:0005524|GO:0016887
Amo10g2561 587 Gene3D - 172 253 - -
Amo10g2561 587 CDD AAA 270 437 - -
Amo10g2561 587 SMART AAA_5 300 439 IPR003593 -
Amo10g2561 587 SMART AAA_5 40 173 IPR003593 -
Amo10g2561 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 521 IPR027417 -
Amo10g2561 587 Gene3D - 254 438 IPR027417 -
Amo10g2561 587 Pfam ATPase family associated with various cellular activities (AAA) 304 436 IPR003959 GO:0005524|GO:0016887
Amo10g2561 587 Pfam ATPase family associated with various cellular activities (AAA) 45 169 IPR003959 GO:0005524|GO:0016887
Amo10g2561 587 PANTHER AAA-FAMILY ATPASE 18 508 - -
Amo10g2561 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 251 IPR027417 -
Amo10g2561 587 Gene3D - 439 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2561 Amo-Chr10 88435382 88441412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2561 235 540 Calmodulin-binding Proteins AT3G56690 45.752 8.60e-83 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2561 - - gmx:100814288 936.791