Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2560 ATGGAGTCTTGGAGTTATGTTTCTGAAGAGAAGGGTTATGTCTCAAACGATGCAATTTCCCCTCCCAACACTCTTGGGAGGAACAGCAAAGGTTCCTTCTTGGGTTGGGAACTGAAAACCCCAGGTGGTTTTTCCATTGAGAATCAAGGTTTTGAGGAATTGGGGTTCCCAGGGATGAAACAATTGCCCCAAGATCCTAATCCAATTAGTAGTGTTCATAGCAGAAAGATTGATAATGACCCTGCTATGGCTACCCCAAACGCATTCTCTTCAAGAGATGATTTCAATTCCAAGATTTCAGACTCTTTGGGGGACTCTAATGGTGGTGGCCGTGATTCACTTATTGACTTGAAGCTTGGTAGGTTTCCTGATCATGGTGATGTTGGTGTGGCGGCGCCAGCATTCTCCAAAGGGGCCCCTATTTTGTCGTCATCGGAGTCGTCCACGCCGCCGAAGAGGGTTCGAGCTTCTGGGATTCACTCTCAGACAGCATACTGCCAGGTCTATGGATGTAACAAGGATCTGAGTGGTTGCAAGGACTACCATAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAGACTTCCAAAGTTATTGTCAATGGTATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAACGAGCGGCGGAGAAAACCACAAGTTGGTATTCACTCTGGAAAGCCTGGGAGGTTGCTTCAGCCATATGGTGAAAGCAGATTCCAGGGAAACATGCTAACATCAGCATCTTTCATCTGCCAAGAGATACTCCCGGCTGGGGCCTTATCTTCTGAGAGATATGGAACAAGTGACTGGTGGAGACCTATAAAAACCGAAGGCGGCACTGGTTTTAGGCATCTTTCTTCTGTTCCTATCTCTAATGGACACCCTCAGTCACGACCTCTGTTTCCTTCATATAATGAGAAGCAATTTCCCTTTCTTCATGAAAATAATGATGCTACATCTGCTGGGGGTAGCATCTTCTGTGAAAATAATAGCTCATATCTACCTGCCATAGGAGGGCCGAACTCGGGGTCACAATCATTATTCCAGGACACGTCCATAGGAGGTGAGGACTTCAATGTTTTCGATACAGAATCGGCTGTTCAAGGACTATCGGGAATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAACTCTTCAAGCCAGTCATCTGGAATTCCCATGGCTCGCTCAATGGTCATTCGGAGCAGCCATAGCAGTAGCCATTATGCCATGAGCCAGGTCTCTGAAAAGATGATAGGAATAACTTCGCAAGCTTCGAGTGGAGTCTCCGATAGGTTTCCATCTGAGTTGAATCCTGCAGATGGAAGTCCTCTTAGCTCTGTGCTGATATCTGACACCAATGACATTGTCAACTTTGAAATGGCAGATGGAATATTCCATGGTTCAGATTTTGTGAATGTGAAAGATCGTCTCTCATGTGATGATGTCCCGACTATCGACTTGCTTCAACTGTCTTCGCAGCTTCAGCGAGTTGAGAGTGAGAGACAATCCTTGCAGGTGAAGCAAGAAAATGATTCATCAGTCTCTCTCCGGATTACTTAA 1644 0.4562 MESWSYVSEEKGYVSNDAISPPNTLGRNSKGSFLGWELKTPGGFSIENQGFEELGFPGMKQLPQDPNPISSVHSRKIDNDPAMATPNAFSSRDDFNSKISDSLGDSNGGGRDSLIDLKLGRFPDHGDVGVAAPAFSKGAPILSSSESSTPPKRVRASGIHSQTAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKPGRLLQPYGESRFQGNMLTSASFICQEILPAGALSSERYGTSDWWRPIKTEGGTGFRHLSSVPISNGHPQSRPLFPSYNEKQFPFLHENNDATSAGGSIFCENNSSYLPAIGGPNSGSQSLFQDTSIGGEDFNVFDTESAVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPMARSMVIRSSHSSSHYAMSQVSEKMIGITSQASSGVSDRFPSELNPADGSPLSSVLISDTNDIVNFEMADGIFHGSDFVNVKDRLSCDDVPTIDLLQLSSQLQRVESERQSLQVKQENDSSVSLRIT* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2560 547 PANTHER 1 PROTEIN, PUTATIVE-RELATED 37 547 - -
Amo10g2560 547 MobiDBLite consensus disorder prediction 76 107 - -
Amo10g2560 547 SUPERFAMILY SBT domain 164 244 IPR036893 GO:0003677|GO:0005634
Amo10g2560 547 Pfam SBP domain 166 239 IPR004333 GO:0003677
Amo10g2560 547 ProSiteProfiles Zinc finger SBP-type profile. 163 240 IPR004333 GO:0003677
Amo10g2560 547 MobiDBLite consensus disorder prediction 84 107 - -
Amo10g2560 547 Coils Coil 515 535 - -
Amo10g2560 547 Gene3D - 157 227 IPR036893 GO:0003677|GO:0005634
Amo10g2560 547 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 547 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2560 Amo-Chr10 88430590 88434187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2560 115 282 SBP-box Gene Family AT1G69170 52.941 5.81e-49 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo10g2560 SBP 5.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2560 - - gmx:100777766 799.275