LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo10g2557	AAGAGAATAGAGAACAAGGTAAATAGGCAAGTGACATTTTCAAAGAGAAGAAATGGGCTTCTGAAGAAGGCATATGAGCTTTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTATGAGTTCTCTAGTTCCTCCAGCTTGCCGCAAACCACTCAAGTAAGAAACCATGACACTCAGAACACTTATCAGGACTATGTGACGTTGAAAGCATATGTAGAACTCCTACAAAGTTCACAGAGGAACCTTCTTGGAGAAGATCTAACCAAAATGACTTCAACAGAACTTCAACAGCTTGAAAATCAATTAGAGTCGGCGTTGACGAATATTAGGTCAACTAAGAATTAA	369	0.4038	KRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSSSSLPQTTQVRNHDTQNTYQDYVTLKAYVELLQSSQRNLLGEDLTKMTSTELQQLENQLESALTNIRSTKN*	123

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo10g2557	122	PRINTS	MADS domain signature	30	51	IPR002100	GO:0003677\|GO:0046983
	Amo10g2557	122	PRINTS	MADS domain signature	15	30	IPR002100	GO:0003677\|GO:0046983
	Amo10g2557	122	PANTHER	DEVELOPMENTAL PROTEIN SEPALLATA 1	1	121	-	-
	Amo10g2557	122	SUPERFAMILY	SRF-like	1	70	IPR036879	GO:0003677\|GO:0046983
	Amo10g2557	122	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	121	-	-
	Amo10g2557	122	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	2	49	IPR002100	GO:0003677\|GO:0046983
	Amo10g2557	122	SMART	madsneu2	1	52	IPR002100	GO:0003677\|GO:0046983
	Amo10g2557	122	ProSiteProfiles	MADS-box domain profile.	1	53	IPR002100	GO:0003677\|GO:0046983
	Amo10g2557	122	ProSiteProfiles	K-box domain profile.	66	122	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Amo10g2557	122	Coils	Coil	96	122	-	-
	Amo10g2557	122	CDD	MADS_MEF2_like	1	53	IPR033896	GO:0000977\|GO:0045944
	Amo10g2557	122	Pfam	K-box region	63	122	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Amo10g2557	122	Gene3D	-	5	77	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo10g2557	Amo-Chr10	88270389	88279204	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo10g2557	1	121	MADS-box Gene Family	AT2G03710	61.481	7.47e-52	160

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Amo10g2557		K-box	9.4e-18	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo10g2557	K09264		K09260	twl:119986957	170.629