Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2556 ATGGGGCGAGGGAGAGTGCAATTGAAGAGGATAGAGAACAAGATCAATCGCCAAGTTACTTTCTCTAAGAGGAGAGCTGGTTTGCTTAAGAAGGCTAACGAGATCTCAGTTCTCTGTGATGCCGAGGTTGCTCTCATCATCTTCTCTACCAAAGGGAAGCTCTTTCAGTTCTCTAGTGATTCCTGTATGGAGAGGATAATTGAAAGGTATGAAAGGTATTCATATGCGGAGAGACAGCAGCTTGTGGCAAATGCTCAGGGACCAAATGCAAACTGGACTTTAGAACATGCAAAGCTCAAAGCAAGGGTGGAAGTCTTACAAAGGAATCAAAGGCATTTTATGGGTGAAGATCTTCAAGGCCTAAGTATGAGAGAACTTCAGAATTTAGAACAACAGCTTGATTCTGCTCTCAAACAAATTCGATCACGAAAGAATCAAATCATGTATGAGAATATCTCACTGCTTCAGAAAAAGGAGAAAGCTCTAAATGAACAAAACAATTCACTAGCTAAGAAGATCAAGGGAAAAGAAAAAGCTACCACAGAACAGACTCATCAATTGGAGCTGCAAGATAATTATACTGTTGCACCTCAAACCTCAGAAAACTTGAATATTAGAGGAATGCCACAAGATAGAAGTGATAATGAAGAAGATAATGATAATGAAGAAGGTATCCAAACTAATGCTAGTGCTAATATCCTTCTTCCCAATTGGATGATTCCTCCTACAAATGAATAG 738 0.3943 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIIFSTKGKLFQFSSDSCMERIIERYERYSYAERQQLVANAQGPNANWTLEHAKLKARVEVLQRNQRHFMGEDLQGLSMRELQNLEQQLDSALKQIRSRKNQIMYENISLLQKKEKALNEQNNSLAKKIKGKEKATTEQTHQLELQDNYTVAPQTSENLNIRGMPQDRSDNEEDNDNEEGIQTNASANILLPNWMIPPTNE* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2556 245 Coils Coil 89 109 - -
Amo10g2556 245 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Amo10g2556 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo10g2556 245 Coils Coil 123 146 - -
Amo10g2556 245 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Amo10g2556 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Amo10g2556 245 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo10g2556 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo10g2556 245 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Amo10g2556 245 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo10g2556 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo10g2556 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo10g2556 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo10g2556 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo10g2556 245 Coils Coil 152 179 - -
Amo10g2556 245 MobiDBLite consensus disorder prediction 197 231 - -
Amo10g2556 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Amo10g2556 245 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2556 Amo-Chr10 88247581 88255981 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2556 1 211 MADS-box Gene Family AT1G26310 58.079 9.39e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo10g2556 K-box 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2556 K09264 - gmx:100816836 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4073 01 115382996 115390712 Amo10g2556 10 88247581 88255981 PCT
Amo11g2423 11 128845643 128851769 Amo10g2556 10 88247581 88255981 PCT
Amo10g2556 10 88247581 88255981 Amo01g4073 01 115382996 115390712 PCT
Amo10g2556 10 88247581 88255981 Amo11g2423 11 128845643 128851769 PCT