Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2554 ATGGGGCGAGGGAGAGTGCAATTGAAGAGGATAGAGAACAAGATCAACCGCCAAGTCACTTTCTCGAAGAGAAGAGCGGGGTTGCTTAAGAAGGCGAACGAGATCTCAGTTCTCTGCGATGCTGAGGTGGCTCTCATCGTCTTCTCTTGCAAAGGGAAGCTCTTTCAGTTCTCCAGTGACCCCTGCATGGAGAAGATACTTGAAAGGTATGAGCGGTATTCATATGCAGAGAGGCAGCTCGTTGCAAATGATCAAGGACCAAATGAAAATTGGACTCTAGAATATGCAAGGCTCAAAGCAAGGGTGGAAGTCTTAGAGAGAAATCAAAGGAATTTTATGGGACAAGATCTGCAATGCTTAAGTCTAAAAGAGCTTCAGAATTTAGAACAGCAGCTTGATTCTGCTCTCAAACAAGTTAGATCACGAAGGAACCAACTCATATATGAGGATATCTCAGTGCTTCAGAAAAAGGAGAAGACCCTACAAGAACAAAACACCTTGCTAGCTAAGAAGATCAAGGAGAAAGAGAAAGCAATCACACAACAAGCTCAACTGGAGCTGCAAAATAACTTTATGGATCTAACCCCCTTTGTTGTGGCACCTCAATCCTCGGAGATGAACATTGGCGGGTTCCCACAAGGTAGAAGTGATGGCGAACATAATGAAGACATGGCAGCTAATGCTCGTGCTAATAATACCCTTCTTCCCCCATGGATGATTCGCCCTATAAATGAATAG 738 0.4417 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIVFSCKGKLFQFSSDPCMEKILERYERYSYAERQLVANDQGPNENWTLEYARLKARVEVLERNQRNFMGQDLQCLSLKELQNLEQQLDSALKQVRSRRNQLIYEDISVLQKKEKTLQEQNTLLAKKIKEKEKAITQQAQLELQNNFMDLTPFVVAPQSSEMNIGGFPQGRSDGEHNEDMAANARANNTLLPPWMIRPINE* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2554 245 Coils Coil 88 115 - -
Amo10g2554 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 218 - -
Amo10g2554 245 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Amo10g2554 245 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Amo10g2554 245 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo10g2554 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo10g2554 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo10g2554 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo10g2554 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo10g2554 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo10g2554 245 Coils Coil 154 188 - -
Amo10g2554 245 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Amo10g2554 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo10g2554 245 Coils Coil 122 145 - -
Amo10g2554 245 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 218 - -
Amo10g2554 245 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo10g2554 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2554 Amo-Chr10 88209177 88217074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2554 1 231 MADS-box Gene Family AT1G26310 58.776 1.15e-93 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo10g2554 K-box 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2554 K09264 - gmx:100784742 323.168