Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2534 ATGAAGATCCGGTCGGTGAAGCTAAGGGAGGCTCACGCCAACAAGGGCGGCCGCCCTTCCTTCTGCTCCGTCCTGTGGGACCAGCAGGCTCGCCACCTCGTCACCGCTGCCTCCTCCGACATCTGCGTCGCCCTCCACGACCCCCTCCTTCCCTCCTCCACTCCCCTCAGGACCCTCCGCCACCACCGTGACGGTGTCACCGCCCTCGCTCTTAGCCCCAATTCCACTTGCCTCGCTTCCGGATCCATCGATCATTCCGTCAAGCTCTACAAATTTCCCGCTGGAGAGTTCGAGACTAATATCACCAGGTTTACTCTTCCAATTCGTTCCTTAGCATTCAACAAATCTGGGAGCATGTTGGCAGCTGCTGGTGACGACGAAGGAATCAAGCTCATAAACACAATTGATGGCACCATAGCTAGAGTCCTCAAAGGCCACAAAGGTTCTGTTACTGGCTTAGCTTTTGACCCCAATGGCGAGTACTTAGCATCCTTGGACTCGTCTGGAACCGTTATTTTCTGGGAGCTTCACTCTGGGAGAATCCTTCATAACCTCAAAAGCATTGCTCCTGATAACGGTTTAGATGTTTCGACTATGAATGTTCTCAGCTGGAGCCCTGATGGTGAGATGTTGGCTGTTCCAGGGTTGCGAAATGATGTGGTGATATATGATAGGGACACTGCTGAAAAGTTGTTTTCTTTGAGAGGGGATCACGCACAACCTATTTGTTACTTGGGTTGGTCGCCCAATGGAAAATACATGGCTACAGCTAGTTTAGACAAGCAGGTTCTTATATGGGATGTTGATAGGAAGCAAGATATTGATAGACAAAAATTTGATGAGAGGATATGTTGCATGGCTTGGAAGCCAATTGGGAATGCCTTGGCTGTTATTGATGTTATGGGGAAGTATGGTATCTGGGAATCTGTTATCCCTTCATCTATGAAGTCTCCCACTGAAGATATACCTGAGAACAAGAAAAGTAACGGGCTTCTTTTCTTTGAAGAGGATGATGAAGAAGTAAATAGTGCAGGCGGAAGCTTGAGTGATCTTGGTGAAAATAGTAATGACGAGTCTGAGCCACCTAGCAGGAAAAGATTGCGAAAACAGTCACTGAGTGAGGAGAATTTGGATATTGATGGTATTGGTGGTGATGAGATTGATTTGTTTCCCAAGGTTGAATCTCATAAGAAACGAAACCGCTCTCAAAAGGAAAAATTGGATGATGTGAATGTGGGTTATAGAAGCACAGTTGCTACATCTAAATCAAAGATGCAGGAGGCATTTCAACCGGGATCCACTCCTGTGCAGCCGGGAAAGAGGCGCTTCTTGTGCTACAACATGCTTGGAAGCGTAACCACTGTTGAACATGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGTGCTCCACGAATTCCATCAATGACTGATCATTTTGGATTTACCATGGCTGCTTTGAATGAGAGTGGAAGCGTCTTTGCAAATCCTTGCAAGGGGGAGAACAACATGAGTACTCTCATGTATCGCCCATTTAGTAGCTGGGCAAATAATAGTGAGTGGTCCATGCGCTTTGAAGGGGAAGAAGTGAAGGTGGTTGCACTTGGTGATGCTTGGGTGGCTGCAGTAACTAGTTTTAACTATCTTCGCATCTTTACTGAGGGTGGTTTGCAGAGGCATGTTATTTCAATAGATGGGCCAGTGGTTACTGCATCAGGTTTCAGGGATAAGCTTGCAGTTGTTACCCATGCCTCTGCTTGCCTTCCCTCCAATGATCAGGTGCTAGAATTAAGAGTATTTAATCTACTTCAGGGGACCCAGCTTCTTCGGGGTCGATTGCCAATAACTCCTGGTTCTTCTCTAAGTTGGTTTGGGTTTAGTGAAGAAGGTCAATTGAGTTCCTATGATTCCAAGGGTGTGCTAAGATTATACACAAGCCAATTTGGTGGTAGCTGGCTCCCGCTCTTCAGTGCTGCTAAGGAGAAGATTGATGAAAACTATTGGGTTGTGGGGTTGAATACAAGCAAGTTATATTGCGTAACATGCAAAAAGCCTGAAACCTTCCCACAGGTGTTGCCAAAGCCAATCTTCAATGTACTAAATCTTTCATTTCCTCTTGCTTCCTCTGATTTGGGATCTGAAGCCCTTGAAAATGAGTTCATATTGAACAACATGCATCTGTTTGAGATTCAGAAAAGAATAGAAGAAATGGCTAGTGCTGGCTTGGATACTAATTCACTTGATGATGAAGCCTTCAATTATGAAGCAGCACAAGATAGATGTATCCTTAGGCTTATAGCATCCTGCTGTTACGGTGATAAACTTGTGCGTGCGACTGAACTTGTAAAGCTTTTGACACTGGAAAAATCAATGAATGGCGCAATAAAACTTGTCACTGCTCTCAAGCTTCCAAACTTGGCTGAGAGGTTCAGCAGCATATTGGAGGAAAGGCTACTCAATGAGATGAAGAACACTACAGAAACAAAACCCTTTGAAAACCATGTTGCGCCCGTCACAGCTGATGCTTCCTTTAGCAGAAGCAAGATGCCAATTCAAACTGAAGCCTCCAAAACAGTAACTATGTCATTATCACCACCAGGATTATCCGCTCCATCATTCACCAAGACAGACAAAACACAAGTAGCAAATACACGTGAAAACGCAATGTTAAAGGAAACTGTGAAGGCGAAGCATGTAGAAGATGAAACAAGTAACAAAGCAGTGAAAGTGGATGCTCCTTCTCGTTCTCATTCACATGACCAATCTATAAGGCAGTCAAATAACAAGTCAGAGGCCAGTTTGGTGAAACCAACTCGGCCTTCTAATCCATTTTTGAAGTCTTCTGTTAAGTAG 2862 0.449 MKIRSVKLREAHANKGGRPSFCSVLWDQQARHLVTAASSDICVALHDPLLPSSTPLRTLRHHRDGVTALALSPNSTCLASGSIDHSVKLYKFPAGEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTIDGTIARVLKGHKGSVTGLAFDPNGEYLASLDSSGTVIFWELHSGRILHNLKSIAPDNGLDVSTMNVLSWSPDGEMLAVPGLRNDVVIYDRDTAEKLFSLRGDHAQPICYLGWSPNGKYMATASLDKQVLIWDVDRKQDIDRQKFDERICCMAWKPIGNALAVIDVMGKYGIWESVIPSSMKSPTEDIPENKKSNGLLFFEEDDEEVNSAGGSLSDLGENSNDESEPPSRKRLRKQSLSEENLDIDGIGGDEIDLFPKVESHKKRNRSQKEKLDDVNVGYRSTVATSKSKMQEAFQPGSTPVQPGKRRFLCYNMLGSVTTVEHDGYSHIEIDFHDTGSAPRIPSMTDHFGFTMAALNESGSVFANPCKGENNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGDAWVAAVTSFNYLRIFTEGGLQRHVISIDGPVVTASGFRDKLAVVTHASACLPSNDQVLELRVFNLLQGTQLLRGRLPITPGSSLSWFGFSEEGQLSSYDSKGVLRLYTSQFGGSWLPLFSAAKEKIDENYWVVGLNTSKLYCVTCKKPETFPQVLPKPIFNVLNLSFPLASSDLGSEALENEFILNNMHLFEIQKRIEEMASAGLDTNSLDDEAFNYEAAQDRCILRLIASCCYGDKLVRATELVKLLTLEKSMNGAIKLVTALKLPNLAERFSSILEERLLNEMKNTTETKPFENHVAPVTADASFSRSKMPIQTEASKTVTMSLSPPGLSAPSFTKTDKTQVANTRENAMLKETVKAKHVEDETSNKAVKVDAPSRSHSHDQSIRQSNNKSEASLVKPTRPSNPFLKSSVK* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2534 953 Pfam Minichromosome loss protein, Mcl1, middle region 428 709 IPR022100 -
Amo10g2534 953 CDD WD40 22 297 - -
Amo10g2534 953 Pfam WD domain, G-beta repeat 141 174 IPR001680 GO:0005515
Amo10g2534 953 Pfam WD domain, G-beta repeat 54 90 IPR001680 GO:0005515
Amo10g2534 953 Gene3D - 2 195 IPR015943 GO:0005515
Amo10g2534 953 MobiDBLite consensus disorder prediction 928 953 - -
Amo10g2534 953 MobiDBLite consensus disorder prediction 899 927 - -
Amo10g2534 953 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Amo10g2534 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Amo10g2534 953 MobiDBLite consensus disorder prediction 342 380 - -
Amo10g2534 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Amo10g2534 953 SMART WD40_4 136 175 IPR001680 GO:0005515
Amo10g2534 953 SMART WD40_4 52 91 IPR001680 GO:0005515
Amo10g2534 953 SMART WD40_4 178 224 IPR001680 GO:0005515
Amo10g2534 953 SMART WD40_4 94 133 IPR001680 GO:0005515
Amo10g2534 953 SMART WD40_4 227 267 IPR001680 GO:0005515
Amo10g2534 953 Pfam Anaphase-promoting complex subunit 4 WD40 domain 202 289 IPR024977 -
Amo10g2534 953 MobiDBLite consensus disorder prediction 357 375 - -
Amo10g2534 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Amo10g2534 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Amo10g2534 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Amo10g2534 953 SUPERFAMILY WD40 repeat-like 22 308 IPR036322 GO:0005515
Amo10g2534 953 MobiDBLite consensus disorder prediction 899 953 - -
Amo10g2534 953 Gene3D - 196 326 IPR015943 GO:0005515
Amo10g2534 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Amo10g2534 953 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 930 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2534 52 270 U-box Gene Family AT2G33340 24.324 6.61e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2534 K11274 - gmx:100818807 1447.57