Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2507 ATGACGGAACCGGAGCTCAACCATGCGGAGGACCAATCAAACAAGAACAAGAAGCTCCGCAAAAGGAAAAGGCCTCGCAAAGCCCAACAAGAAGCTCGCAATTCCGCTGATGATGAAGACCAAGAGCAAGAGCAGCACAACGACGCTAACAACACCGATGAAGTAGAAGAAGAAGAAAAAAGAGAAGAGAAAAATGTGATGCCTGGCGTTGAATCTGGAATCATGAGTTCCGTTTCATTCGATTCTCTTGAACTCTCTGATCCCACTTCCAAGGCTATTATGGACATGGGTTTCAATCGAATGACTCAGATTCAAGCGAGAGCTATTCCTGAGCTTTTGAAAGGGAAAGATGTTCTTGGTGCCGCGAGGACTGGTTCTGGGAAAACCCTTGCATTTTTAATCCCGGCTGTGGAATTGTTGTACAATGCCGAGTTTAAACCTCGTAATGGAACTGCCGTTATTGTCATATGTCCAACTAGAGAGCTTGCAATTCAGACACATGCGGTGGCAGAGGAATTGCTCAAGTATCATTCACAAACTCTTGGATTAGTTATTGGGGGATCAGGTAGAAAACGAGAAGCTGATCGCATTGTTTCTGGGGTAAATCTGTTGGTGGCTACACCTGGACGCCTACTTGATCACCTTCAAAATACAAAGGGATTCATATACAAAAATTTGAAGTGCCTCATTATTGATGAAGCTGACAGGATATTAGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAATATACTTCCAAAGACTAGGCAAACAGCTTTGTTTTCAGCTACGCAAACAAAGAAGGTTAAGGATCTTGCCCGTATGTCATTTCAGACAACTCCTTCCAATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAAGGCTATGTTGTTGTTCCATGTGCTAAGCGTTTTGTTGTTCTATATTCATTCTTGAGGAGGCATCAATCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTGTGCTGGATTGGATTGCTTAAGTATTCATGGAAAACAAAAGCAGCATGCCCGAACAACTACATTCTTTAATTTCTGCAAAGCAGAAAAGGGGATATTGCTTTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAGCCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGCCAAAGGAAATGCTTTGCTTTTTCTGATTGAGGAAGAATTGCAATTTCTTCGCTATCTTAAGGCAGCGAAGATCCCTATGAAAGAGTATGTATTTGAACACAAGAAGCTTGCGAATATACAGTCTCAACTGGAAAAGTTGGTTGCGGGGATCTATCATTTGAATGTTATGGCTAAAGACGCGTATAGGTCATTTATATTAGCATATAATGCCCACACCATGAAGGATATATTCAATGTTCACCGCCTTGATCTGCAGGCTGTTGCTGCTTCGTTCTGTTTTTCAAACCCGCCGAAGGTGAATCTGAACTTAGACAGCAGTGCTTCAAAGCATAGGAGGAAAATACGCAAAGTGGAAGGAAGATTAAGCGATGGAAAGACAAAATAA 1647 0.4208 MTEPELNHAEDQSNKNKKLRKRKRPRKAQQEARNSADDEDQEQEQHNDANNTDEVEEEEKREEKNVMPGVESGIMSSVSFDSLELSDPTSKAIMDMGFNRMTQIQARAIPELLKGKDVLGAARTGSGKTLAFLIPAVELLYNAEFKPRNGTAVIVICPTRELAIQTHAVAEELLKYHSQTLGLVIGGSGRKREADRIVSGVNLLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIINILPKTRQTALFSATQTKKVKDLARMSFQTTPSNIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRHQSKKVMVFFSSCNSVKFHADLLKCAGLDCLSIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLIEEELQFLRYLKAAKIPMKEYVFEHKKLANIQSQLEKLVAGIYHLNVMAKDAYRSFILAYNAHTMKDIFNVHRLDLQAVAASFCFSNPPKVNLNLDSSASKHRRKIRKVEGRLSDGKTK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2507 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 440 IPR027417 -
Amo10g2507 548 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 47 525 - -
Amo10g2507 548 CDD SF2_C_DEAD 299 429 - -
Amo10g2507 548 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 230 238 IPR000629 -
Amo10g2507 548 SMART helicmild6 338 419 IPR001650 -
Amo10g2507 548 MobiDBLite consensus disorder prediction 525 548 - -
Amo10g2507 548 SMART DUF4217_3 459 522 IPR025313 -
Amo10g2507 548 MobiDBLite consensus disorder prediction 1 16 - -
Amo10g2507 548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 311 458 IPR001650 -
Amo10g2507 548 Pfam DEAD/DEAH box helicase 102 273 IPR011545 GO:0003676|GO:0005524
Amo10g2507 548 CDD DEADc_DDX18 89 282 IPR044773 GO:0003724|GO:0005524
Amo10g2507 548 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 106 IPR014014 GO:0003724
Amo10g2507 548 Pfam Domain of unknown function (DUF4217) 460 520 IPR025313 -
Amo10g2507 548 PANTHER RNA HELICASE 47 525 - -
Amo10g2507 548 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 284 IPR014001 -
Amo10g2507 548 SMART ultradead3 97 302 IPR014001 -
Amo10g2507 548 MobiDBLite consensus disorder prediction 29 67 - -
Amo10g2507 548 Gene3D - 295 538 IPR027417 -
Amo10g2507 548 MobiDBLite consensus disorder prediction 1 71 - -
Amo10g2507 548 Pfam Helicase conserved C-terminal domain 314 418 IPR001650 -
Amo10g2507 548 Gene3D - 13 287 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2507 Amo-Chr10 87130446 87135974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2507 79 433 Eukaryotic Initiation Factors Gene Family AT1G72730 30.641 5.03e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2507 K13179 - gmx:100793807 858.981