Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2477 ATGGCGGCGACGGAGTCGGATCTTGAATGGTGGAGGACGATGATCGGATTCGACGAAGCATCCAACGGATCTCCCAACGGGGACGACGTCAAGCCCGCCGACTTGAGAGGCAGCGGCGTTTTATCTGCCACCGTCCTCACCGGCGGATTCTGCTATGTCGGTGACGGCGCCGAAAATCCGGACTATGTGGTAAATTCATTTTCAACTTGTGGGGGAATAGCAGATGCCAATACCGTTGTCTGTTCCCAAAACGTCATTACCAAGAATTCCACCATTTCTGCTACTAATGATTCCCAGTCATCCATGTGTGGCACTGTTGGAAGCCCGGTATCTTCTAATAAACCAAGTGACAGAGACAATCAAGCCAAAGTAGCTACAAGTGGTTCCTCTGAGCCTTCTGATGAGGATGATGAAACTGGTCCTTGTGAACAAAGCACAAATCCTGTTGATGTGAAGCGCCTTAGAAGGAAGGAATCTAATCGCGAATCTGCAAGGAGGTCAAGAAGAAGAAAACAAGCGCATTTAGCTGACCTTGAGATGCAGGTTGAAAAGCTGAAACTGGAAAATGCAACCCTATACAAGCAGTTTAATGATGTTAGACAACAATTTCATGAGGCGGATACTAATAACCGAGTGCTAAAATCAGATGTTGAAGCCTTGAGAGCTAAGGTGAAGTTAGCCGAGGATATGGTCACTCGAGGCTCTGTTACCACGTTAAACAACCAACTTCTTCAGCCTCATTCTCAACTGAGCGCGCCGCCTCATATGGCACACGTGTCGCCGACCATCACTGTCCATGCAAACGATGCCTTATACAATAATGGTGGTGGTGGAGGTGGACAGAATCATCCAGGTCTTGGTGGGCTGGGAGACTTGGATATTCCTTACAATGATATCAACAATGGAGTCATAAACGATGCTCTAAACTCCATGAACATCTGGCAGCAGTAA 951 0.4753 MAATESDLEWWRTMIGFDEASNGSPNGDDVKPADLRGSGVLSATVLTGGFCYVGDGAENPDYVVNSFSTCGGIADANTVVCSQNVITKNSTISATNDSQSSMCGTVGSPVSSNKPSDRDNQAKVATSGSSEPSDEDDETGPCEQSTNPVDVKRLRRKESNRESARRSRRRKQAHLADLEMQVEKLKLENATLYKQFNDVRQQFHEADTNNRVLKSDVEALRAKVKLAEDMVTRGSVTTLNNQLLQPHSQLSAPPHMAHVSPTITVHANDALYNNGGGGGGQNHPGLGGLGDLDIPYNDINNGVINDALNSMNIWQQ* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2477 316 Gene3D - 151 208 - -
Amo10g2477 316 Coils Coil 210 230 - -
Amo10g2477 316 Pfam bZIP transcription factor 151 202 IPR004827 GO:0003700|GO:0006355
Amo10g2477 316 MobiDBLite consensus disorder prediction 94 173 - -
Amo10g2477 316 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 150 213 IPR004827 GO:0003700|GO:0006355
Amo10g2477 316 CDD bZIP_plant_GBF1 153 204 IPR045314 GO:0003700|GO:0006355
Amo10g2477 316 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 155 170 IPR004827 GO:0003700|GO:0006355
Amo10g2477 316 MobiDBLite consensus disorder prediction 94 129 - -
Amo10g2477 316 SMART brlzneu 148 212 IPR004827 GO:0003700|GO:0006355
Amo10g2477 316 PANTHER BZIP TRANSCRIPTION FACTOR 60 315 - -
Amo10g2477 316 Coils Coil 161 202 - -
Amo10g2477 316 SUPERFAMILY Leucine zipper domain 151 204 IPR046347 GO:0003700|GO:0006355
Amo10g2477 316 PANTHER BASIC LEUCINE ZIPPER 63 60 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2477 Amo-Chr10 86616789 86622553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2477 97 289 bZIP Transcription Factor Family AT5G24800 53.398 5.19e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo10g2477 bZIP_1 5e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2477 K25784 - gmx:778193 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2477 10 86616789 86622553 Amo20g3054 20 134138957 134144015 hybridization
Amo10g2477 10 86616789 86622553 Amo06g3107 06 98127559 98134151 PCT