Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2473 ATGCAAAAGGAAAAGGAAGCAATCACCACCAATAAGGAGGGGATTAATAAGAAGGACATAGAAATAATGGAAGGTTGCAATGGAAAGGAGGAAACCCTACCACCTGGGTTTCGATTTCATCCAACCGACGAAGAACTCATTACTTGCTATCTCATAAACAAGATCTCGGATTCAAACTTTTCAGGCAGGGCAATAACTGATGTTGATCTCAATAAATGTGAGCCATGGGAGCTTCCAGGGAAGGCGAAGATGGGAGAAAAAGAATGGTACTTCTTCAGCCTGAGGGACCGGAAGTACCCAACTGGGGTGCGAACGAACCGAGCCACGAACACCGGGTATTGGAAGACCACCGGAAAAGACAAAGAGATCCTTAATAGTGTTACATCGGAGCTAATTGGGATGAAGAAAACTTTGGTTTTCTACAAAGGAAGAGCCCCCAGGGGAGAGAAGAGTAATTGGGTCATGCATGAATATCGCATTCATTCTAAATCCACCTTTCGAACAACCAAGCAGGATGAATGGGTGGTTTGCCGTGTGTTCCAGAAGAGTGCCGGTGCAAAGAAGTACCCTTCTTCCAACCATGCAAGTAGGGCAATGAACCCTTTCAACCTTGAAATAGGTCACCACAATATTGTGCCGCCGCCGCCAATGATGCAACTCGGAGACCCCGCCGCCGCTCATTTCCTCTATGGAAGGAACTATATGAATACTGCAGAGTTAGCAGAAGTAGCTAGGGTTTTGCGTGTTGGTACTGGATCAACCAGTACCAACCTACCCGGGATGCAGCCTCAGATAAATTATCCAGTGGCTGCATCTCCAGGAATTGGATTCACAATTTCAGGACTCAATTTAAATCTAGGAGGCGGAGGAGGCGAAACAGTAGTGGCCACAACACAACCAGTTTTGCGGCCCATGCAGCCGACTCCTCCGTCCCAAACATTGGGTATGGTTCCTCATCATCAAGTTCATCATGATGTGAGTTCCAACATGATTTCAACAAATTCCCTTGGTGCTGAGAATGTGGGTTACGTCAATGAAATAAGCAACACAAATGGTGGTCATGGAAATAGGTTTATGGGCATGGATCATTGCATGGATCTTGATAATTACTGGCCTTCCTACTAA 1125 0.4604 MQKEKEAITTNKEGINKKDIEIMEGCNGKEETLPPGFRFHPTDEELITCYLINKISDSNFSGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTTKQDEWVVCRVFQKSAGAKKYPSSNHASRAMNPFNLEIGHHNIVPPPPMMQLGDPAAAHFLYGRNYMNTAELAEVARVLRVGTGSTSTNLPGMQPQINYPVAASPGIGFTISGLNLNLGGGGGETVVATTQPVLRPMQPTPPSQTLGMVPHHQVHHDVSSNMISTNSLGAENVGYVNEISNTNGGHGNRFMGMDHCMDLDNYWPSY* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2473 374 Pfam No apical meristem (NAM) protein 34 160 IPR003441 GO:0003677|GO:0006355
Amo10g2473 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 371 - -
Amo10g2473 374 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 18 371 - -
Amo10g2473 374 Gene3D NAC domain 42 186 IPR036093 GO:0003677|GO:0006355
Amo10g2473 374 ProSiteProfiles NAC domain profile. 33 182 IPR003441 GO:0003677|GO:0006355
Amo10g2473 374 SUPERFAMILY NAC domain 30 182 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2473 Amo-Chr10 86578452 86581510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2473 29 374 NAC Transcription Factor Family AT2G24430 51.676 3.01e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo10g2473 NAM 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2473 - - gmx:100804931 531.946